RNA id: TU92178


Basic Information

Item Value
RNA id TU92178
length 242
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G73803
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37172930 ~ 37173171 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatttgcatgttaatgagtgaaataagtatttgaccccttcgacttagtacttggtagcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggttttgaggctgatgtttggcaactcgaaccttcagctccctccacagattttttATGGGATT

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92141 lncRNA downstream 156757 37015950 ~ 37016173 (-) True G73776
TU92083 lncRNA downstream 442369 36689357 ~ 36730561 (-) True G73722
TU92063 lncRNA downstream 520887 36646059 ~ 36652043 (-) True G73704
TU92025 lncRNA downstream 696982 36474243 ~ 36475948 (-) True G73667
TU91948 lncRNA downstream 978680 36194048 ~ 36194250 (-) True G73609
TU92228 lncRNA upstream 344872 37518043 ~ 37518331 (-) True G73851
TU92230 lncRNA upstream 358299 37531470 ~ 37531976 (-) True G73853
TU92234 lncRNA upstream 400567 37573738 ~ 37574140 (-) True G73857
TU92243 lncRNA upstream 408595 37581766 ~ 37582162 (-) True G73866
TU92288 lncRNA upstream 510068 37683239 ~ 37683542 (-) True G73908
AMCG00014854 mRNA downstream 57264 37080157 ~ 37115666 (-) True AMCG00014854
AMCG00014856 mRNA downstream 99162 37068871 ~ 37073768 (-) True AMCG00014856
AMCG00014855 mRNA downstream 125451 37044210 ~ 37047479 (-) True AMCG00014855
AMCG00014851 mRNA downstream 228191 36931007 ~ 36944739 (-) True AMCG00014851
AMCG00014849 mRNA downstream 368091 36803232 ~ 36804839 (-) True AMCG00014849
AMCG00014858 mRNA upstream 129053 37302224 ~ 37309817 (-) True AMCG00014858
AMCG00014857 mRNA upstream 150571 37323742 ~ 37359709 (-) True AMCG00014857
AMCG00014859 mRNA upstream 244362 37417533 ~ 37421167 (-) True AMCG00014859
AMCG00014861 mRNA upstream 381718 37554889 ~ 37558209 (-) True AMCG00014861
AMCG00014860 mRNA upstream 429301 37602472 ~ 37616362 (-) True AMCG00014860
TU92007 other downstream 779437 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 918743 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 990579 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 1564253 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 2402951 34769583 ~ 34769979 (-) True G73328
TU92209 other upstream 151849 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 606162 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 1170151 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 1238989 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 1259092 38432263 ~ 38432875 (-) True G74115

Expression Profile