RNA id: TU92969


Basic Information

Item Value
RNA id TU92969
length 896
RNA type TUCP
GC content 0.47
exon number 2
gene id G74477
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39637899 ~ 39638957 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGTATAttaacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtatattAACACTGTCTGTATTCTGCAGTTGTTTGAGGATCTGGAGAAGATGGTGGGATCAGCAGAGGCACAGAAAGAGGtgaagagtgagagagggagtgaaagaGAGCAGCACATCCGCTACAGAGCCAGCAGCAACACACACgGCAACCAATCAGGAGTGAAGAAGCTGCAGACCCCGCCCCCCTCAGGTTTGCTCGGCACCTTCCCCGCACTGCGATTGGTCCTGGGGCTGGGCGTGGCTGCGGCAGCATTCGCCGTGGGGCTGTACATGCTGTAAAGAGGCAGTGCTCGAGGTGGCGGCGAGGGGAGTGACCACAACAGCAGTGACAGCACCATGTCTCCCTCCGAGCCAGCGTCGCACACACTTCATTCCCTGCGTGCTGCTGTGGGTTGTGCCttttagtttgtattattttacacatgtCAGCTTTGTGTGTCTTGTTTGGTCTGTGATCAATAGACTATGTCAATGATTGCAATAATTGTAAAAGCTGCTGCTACACACTGGGCGACTGGGCCCTGACAGCAACACACTGCGATTGGGGTTCTAGTCTTTCCAATTCCTGTTCCTTAACGAGCTCATTTGATTCAATAATTTGGGCTTAATTAGTCTCAGTTAACCTTGTGTAACccaggagacacacacacaggtttgtCATATCTAATTAACGAGTTATCAAAGGGCCTAATTGACAAACAGACCTGCTGCCAGCTCAGTTGGGTGGTTCTTCgtgtatttttgtaacatttaacattttccaacaaatactgtataatattgTTAACAAGAAGAATtatctattttgtattattttcataagaAATAAAGCCGATTTGGTGACAGGG

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92961 lncRNA downstream 13106 39623354 ~ 39624793 (-) True G74469
TU92952 lncRNA downstream 46494 39590496 ~ 39591405 (-) False AMCG00014914
TU92932 lncRNA downstream 66493 39570678 ~ 39571406 (-) True G74446
TU92912 lncRNA downstream 138222 39498703 ~ 39499677 (-) True G74427
TU92896 lncRNA downstream 160795 39463079 ~ 39477104 (-) True G74414
TU93009 lncRNA upstream 60606 39699563 ~ 39702594 (-) True G74501
TU93019 lncRNA upstream 97087 39736044 ~ 39736401 (-) True G74510
TU93021 lncRNA upstream 105171 39744128 ~ 39744359 (-) True G74512
TU93024 lncRNA upstream 114738 39753695 ~ 39753938 (-) True G74515
TU93159 lncRNA upstream 323973 39962930 ~ 40005067 (-) False G74597
AMCG00014915 mRNA downstream 38403 39592614 ~ 39599496 (-) True AMCG00014915
AMCG00014914 mRNA downstream 46241 39590558 ~ 39591658 (-) True AMCG00014914
AMCG00014910 mRNA downstream 101056 39531326 ~ 39536843 (-) True AMCG00014910
AMCG00014906 mRNA downstream 258783 39378444 ~ 39379116 (-) False AMCG00014906
AMCG00014905 mRNA downstream 352552 39282154 ~ 39285347 (-) True AMCG00014905
AMCG00014917 mRNA upstream 1454 39640411 ~ 39641256 (-) True AMCG00014917
AMCG00014916 mRNA upstream 9847 39648804 ~ 39657562 (-) True AMCG00014916
AMCG00014920 mRNA upstream 123613 39762570 ~ 39764640 (-) True AMCG00014920
AMCG00014924 mRNA upstream 181606 39820563 ~ 39822089 (-) True AMCG00014924
AMCG00014927 mRNA upstream 319868 39958825 ~ 39960996 (-) True AMCG00014927
TU92854 other downstream 377539 39258062 ~ 39260360 (-) True G74375
TU92703 other downstream 717546 38898095 ~ 38920353 (-) True G74247
TU92596 other downstream 993361 38597368 ~ 38644538 (-) False G74160
TU92559 other downstream 1146959 38490323 ~ 38490940 (-) False AMCG00014891
TU92542 other downstream 1205024 38432263 ~ 38432875 (-) True G74115
TU93111 other upstream 262513 39901470 ~ 39983396 (-) True G74569
TU93148 other upstream 295936 39934893 ~ 40012081 (-) True G74593
TU93146 other upstream 305773 39944730 ~ 39951070 (-) True G74591
TU93152 other upstream 345737 39984694 ~ 40012081 (-) False G74593
TU93302 other upstream 597445 40236402 ~ 40236795 (-) False AMCG00014938

Expression Profile