RNA id: AMCG00015495


Basic Information

Item Value
RNA id AMCG00015495
length 3261
RNA type mRNA
GC content 0.62
exon number 23
gene id AMCG00015495
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10200780 ~ 10211282 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgGCAGTGGTGAAGCTCAGGAGCACAGAGCGGGTTTTCGCCATGAAGATCCTCCACAAGTGGGAGATGATCAAGAGAGCTGATacggCATGTTTTCAGGAGGAGAGGGATGTGCTGGTGAAAGGAGACAAGCACTGGATCACAAACCTGCACTACGCTTTCCAGGATGACAAGTACCtgTACCTGGTGATGGACTACTACGTTGGAGGAGACCTGCTGACTCTGCTCAGTAAATTCGAGGACCGGCTGCCTGAGGACATGGCGCGCTTCTACCTGGCTGAAATGGTGCTGGCTGTCCATGCCGTCCACCAGAGCGGCTACGTGCAGTCTTCGGTGGCCGTGGGAACCCCTGACTACATCTCCCCGGAGATCCTGCAGGCCATGGAAGACGGGAAGGGCCGCTATGGGCCCGAGTGCGACTGGTGGTCCCTGGGTGTGTGCTCCTATGAGCTGCTGTTCGGGGAGACGCCCTTCTACGCTGAGTCCCTGCTGGAGACATACAGCAAGATCATGAACCAcaagGATCACCTCAAGTTCCCCTCTGACATCACCGACGTATCCGAGGAGGCGAAGGACCTGATTGGCCGGCTGATCTGCGAGCGGAGCGTGCGATTGGGCCAGAAGGGCATCCGGGACTTCCAGGAGCATGCCTTCTTCAAGGGCGTGGCCTGGGACTCCATCCGCCACCACAGCCCCCCCCACGTCCCTGAAGTCAGCAGCCCCGCGGACACGTCCAACTTCGACGTTGACGACGAGACGCTCCGGAATTCGGAGACGCTGCCCCCGTCCTCCCACAGCTCCTTCGCAGGAAACCAACTGCCCTTCGTAGGATTCACCTTCACCTCCCACTGCGCTCTGTCGGACCGTGGCTGCCTGATGGAGTTGagtgagaaagagggagggagcgagagagtgGAGACTGACATGCCAAAggAGTCAGTGCGGCCTCAGAATCTCGCCCCCCGGCCCTGCGAACCCCACCCAGAGCTGAAgaccctgagagaggaggtggAGAGACTTCAAGCTAAACTTGCCGAAGCAGCCGCAGTGCAGGGCAGTGAGGCTGGGAAGCAGCGCACTGAAGACGAGGCTAAGACTCTTCGTCGCCTGGAGGGCCAGCTGAAGTCcaccagagaggagagagacagctTCCGCacgGATGTGGCGGAGCTGAGGCAGCGGGCGGAGGTGGCGGCAGGGGAGCTGCGGGAGGCGCTGGAGCTGCAGTGTGACAGCAGTGCATCTGAAATCAGTCAGCAGAAGAGGCTCAGAGAGCGGACAGAGCAGTACTGCCGAGAGCTGGAACAGGAGCTGGACAACCTCaaggtctgtctgtctatctgtcacTCTCTGCCACTAATACACTCTGTGTGTCACTCTGTCACTCTCTGCCACTGTAATACATTCTGTCTGGCTGTCCAACAGAAGAAGCCAAGTGTGGGTCAAAGGTCAGCCGAGCCAGGGGCCGGGACCAAACAGGAACTGACCCGTCTTGGGGTGGAGCTAGAGCGCAAGGGGGCGGAACAGGAGGCGGAGCTGAAGAACCTGCAGCGTGCActgagggagaaggaggagcagcAGGGGCTGTCAGAGGAGGTGCACCGGCTGCAGGCGGCCAACAGGCAGCTAGAGGAGGAGTGCCAGAGTCTGAGCACCAGGAAGCAGTCTGTGTCCCACTGGGAGGAACAGATCTCTGATATCCTGCAGTGGGTGAACGATGAGAAGGAGTCACGGGGGTACCTGCAGGCTCTGACCACACGGCTTACCGAGGAGATGGAGGGAATAAAGGCGACTGAGCGCACCCCTGCCCGGCAGGAGAGTCAGTGGAAGGCGCGCCGGCTGCAGAAGACTGAGGCCTCAGCGAGGCTGGAGCTGCAGTCAGCCCTGGAGGCAGAGCTGAGGGCCAAGCAGAGCCTGCAGGAGGAGCTCAACACCCTGCGTGCCGCCAGCCTCAACACTGACAAtaAGCTGCAGGAGGCTGAGAAGCAGAAGGAGGAGCTGAGGGCAGAGCTGGAGGGACTGAAGACTGAGATTAAATCCCACCCCTCCTCAGatCCTCGCAGTAGAGAGTCCATCATCACCCTCATGCCGCTGTCCCCAGTGGAGCCCACTCCACACCAGTTCAAAGTGAAATCCTTCTCCTGCCCCATGAAGTGCAACCGCTGCACCTCCCTGCTGATGGGGCTGGTGAGACAGGGGCTGCAGTGTGATGCATGTGGGTACGCCTGTCATGTGACCTGTGCCAACAGCGCCACTATCTGTCCTGACAAGAGCAGGAAGCCGCTGGGAGTCGACCCAGTCAGAGGCACCGGTACTGCCTTCGAGGGGCAGCTGTCTGTCTCCTTCTCCCAGCTGGCAGTGCCCCCCTGCACCcaggcgctgctgctgctggcagACAGTGAGGCGGAGCGCCGCCGCTGGGAGGCATTGCTGGGGGAGCTGCAGGAGCTGAGCGTGCGCCACAGCCTGCCCCCCCGCTGTGCCCTCACCCCCCGCGAGGCCTACGACCCCGCGCTGCCCTTCATACGCCAGGCCCAGTGCGCCGCCATCCTGGaccGGGAGCGTATTGCACTAGGTACAGAGGAAGCTCTGTATGTCATAGATGTCACTAATAATGagatAGTCCAGCTGCCTCAGTGCAAGCGAGTGTTCCAGATCGAGGTGCTGGGCGTGGCCGAGGGCGTTGCCGTGCTGTGTGGCCGGAGCCGGGGAGTGCGTGTGTTGCCATGGGCAGATTTGAGCAAGCCGGACAGCGGGGGGACCAAGCTGCCAGACGTGCGTGGtgtcacagcactggcacagggGGGGCTGACACAGGGCACCCAGCCCTGCCTCTGCGTGGCCATAAAAAGACAGgtGCTGTGTTACCGAGTGGCCCCGGGCTCGCTGCGCTGCACCCGGCTGTGCGAGGTGACGGCGCCGGCGCCGGTCCAGTGGCTGGGTGTGTTTGGGGACCGGCTGTGTGTGGGGTACCCCTCGGGCTTCTCGCTGTACCCTCTGCTGCAGGAGGGCCCTCCCTTGGCATTGCTCAGCCCGGATGACCCCTCACTGCTGCCCCTGCCGCAGCCGCCCCCTCCCGATGCCCTGTGTGCCGTGGAGATTGCGCGCGATGAGGTGCTGCTGTGCTTCACTAGCCTGGGGCTGTACGTGGACTACAAGGGGCGCCGCATTCGGCACCGCGAGCTCATGTGGCCCAGTCCCCCATCGCACTGCTGCTACAGCGCCCCCTACCTGTCAGTGTACAGTGAAAGCGGCGTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122493 lncRNA downstream 35383 10107233 ~ 10165397 (-) True G98211
TU122438 lncRNA downstream 124887 10026114 ~ 10075893 (-) True G98163
TU122439 lncRNA downstream 175704 10021351 ~ 10025076 (-) False AMCG00015479
TU122440 lncRNA downstream 179225 10018764 ~ 10021555 (-) False AMCG00015479
TU122412 lncRNA downstream 214152 9974041 ~ 9986628 (-) True AMCG00015468
TU122570 lncRNA upstream 76744 10288026 ~ 10340868 (-) True G98269
TU122588 lncRNA upstream 167003 10378285 ~ 10380049 (-) True AMCG00015501
TU122626 lncRNA upstream 278297 10489579 ~ 10493106 (-) True G98314
TU122734 lncRNA upstream 456607 10667889 ~ 10704395 (-) False AMCG00015519
TU122740 lncRNA upstream 497139 10708421 ~ 10708752 (-) True G98399
AMCG00015493 mRNA downstream 2178 10195564 ~ 10198602 (-) True AMCG00015493
AMCG00015497 mRNA downstream 6922 10188842 ~ 10193858 (-) True AMCG00015497
AMCG00015487 mRNA downstream 72569 10121999 ~ 10128211 (-) True AMCG00015487
AMCG00015485 mRNA downstream 89596 10110395 ~ 10111184 (-) True AMCG00015485
AMCG00015486 mRNA downstream 100151 10083788 ~ 10100629 (-) True AMCG00015486
AMCG00015496 mRNA upstream 42410 10253692 ~ 10259089 (-) True AMCG00015496
AMCG00015494 mRNA upstream 56657 10267939 ~ 10270312 (-) True AMCG00015494
AMCG00015499 mRNA upstream 86761 10298043 ~ 10334137 (-) True AMCG00015499
AMCG00015500 mRNA upstream 141927 10353209 ~ 10355965 (-) True AMCG00015500
AMCG00015501 mRNA upstream 168488 10379770 ~ 10385379 (-) False AMCG00015501
TU122509 other downstream 2126 10196618 ~ 10198654 (-) False AMCG00015493
TU122510 other downstream 2126 10196618 ~ 10198654 (-) False AMCG00015493
TU122511 other downstream 2126 10196618 ~ 10198654 (-) False AMCG00015493
TU122512 other downstream 2126 10196618 ~ 10198654 (-) False AMCG00015493
TU122513 other downstream 2126 10196618 ~ 10198654 (-) False AMCG00015493
TU122572 other upstream 114717 10325999 ~ 10340868 (-) False G98269
TU122879 other upstream 803343 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 803343 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 811887 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 1022033 11233315 ~ 11261168 (-) False AMCG00015535

Expression Profile