RNA id: AMCG00015496


Basic Information

Item Value
RNA id AMCG00015496
length 819
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00015496
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10253692 ~ 10259089 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCAGACCATTTACATGGGGGGTGTGCTAGTTGGCGCCATGATCTTTGGGGGGCTGTCTGACAGgtttgGCCGGCGCTTCCTGCTCCTGTTCTCTCACCTGCTGATGGCAGTCATTGTGGAGTGGATTCCCACACAAATCCGCACAATTGTGGGCACAGGGACCGGCTACTGCTACACCATTGGCCAGCTGGTCCTGACAGCGGTGGCCTACAGCATCAGAGACTGGCGCTGGCTCACCCTGGCCGTCTCCCTGCCCTTCTACGTCTCCTTCCTGTACTcctgGTGGTTGGTGGAATCGGCGCGCTGGCTGGTGCTGAATGGGAAAGAAGACGTGGCCGTCAAGAACCTGCACAGGGTGTCTCGCATCAATGGCCGCAAAAAGGAGGGGAAGAAAATCACCCCTGAgAAGTTTGGCGTCGATATCTACCTGATCCAGGTCATCTTCAGCTGCGTGGACATCCCCGCCAAGTTCATCACCACAGTGGTCATGGCACTGCTGGGGAGGCGGCCCTCGCAtcagAATGGTATGGGCTGGGTGTCTACGATGGCGCGGATCGGGTCTATGGTCGCTCCTATGGTGCTGTTGTTAGGGGATCTGCTGCCCTCGTTGCCGGGGCTGATCTACGGAGGGGCGCCCTTCGTGGCCGGAATCTTCGCCCTCTTCCTGCCGGAGACGCTGGGGCAGCAACTGCCCGACACCATCCAGGACGTGGAGGAAAGGTTTGCAGGGCGGGGCCCCAGCGATGTCCCACCCATAGAGGAGGAGCTTGTGCTGAAGGAGGTCAAAAATTCGCTGATGAAGGAAGCCATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122498 lncRNA downstream 31167 10173101 ~ 10222525 (-) True G98216
TU122493 lncRNA downstream 88295 10107233 ~ 10165397 (-) True G98211
TU122438 lncRNA downstream 177799 10026114 ~ 10075893 (-) True G98163
TU122439 lncRNA downstream 228616 10021351 ~ 10025076 (-) False AMCG00015479
TU122440 lncRNA downstream 232137 10018764 ~ 10021555 (-) False AMCG00015479
TU122570 lncRNA upstream 28937 10288026 ~ 10340868 (-) True G98269
TU122588 lncRNA upstream 119196 10378285 ~ 10380049 (-) True AMCG00015501
TU122626 lncRNA upstream 230490 10489579 ~ 10493106 (-) True G98314
TU122734 lncRNA upstream 408800 10667889 ~ 10704395 (-) False AMCG00015519
TU122740 lncRNA upstream 449332 10708421 ~ 10708752 (-) True G98399
AMCG00015495 mRNA downstream 42410 10200780 ~ 10211282 (-) True AMCG00015495
AMCG00015493 mRNA downstream 55090 10195564 ~ 10198602 (-) True AMCG00015493
AMCG00015497 mRNA downstream 59834 10188842 ~ 10193858 (-) True AMCG00015497
AMCG00015487 mRNA downstream 125481 10121999 ~ 10128211 (-) True AMCG00015487
AMCG00015485 mRNA downstream 142508 10110395 ~ 10111184 (-) True AMCG00015485
AMCG00015494 mRNA upstream 8850 10267939 ~ 10270312 (-) True AMCG00015494
AMCG00015499 mRNA upstream 38954 10298043 ~ 10334137 (-) True AMCG00015499
AMCG00015500 mRNA upstream 94120 10353209 ~ 10355965 (-) True AMCG00015500
AMCG00015501 mRNA upstream 120681 10379770 ~ 10385379 (-) False AMCG00015501
AMCG00015507 mRNA upstream 135355 10394444 ~ 10404856 (-) True AMCG00015507
TU122509 other downstream 55038 10196618 ~ 10198654 (-) False AMCG00015493
TU122572 other upstream 66910 10325999 ~ 10340868 (-) False G98269
TU122879 other upstream 755536 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 755536 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 764080 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 974226 11233315 ~ 11261168 (-) False AMCG00015535

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_02634636_02643446.mRNA True 2025 mRNA 0.48 10 CI01000006 2634288 ~ 2643446 (-)