RNA id: AMCG00015500


Basic Information

Item Value
RNA id AMCG00015500
length 1434
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00015500
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10353209 ~ 10355965 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTGTTTACGGCGACACCTTGATTTTATTCATTCGTTACACACCGAGGGGATGCATCTAttataaaaattattattattattattattattatttgacatTAGCACAGTAACAGAAGCGTAGAGTgcgggtgggtgggtgtgtagTTTCATTCACCGATCGGAGTCCACTTTTACGGAACACGCAGGGTTTCCTATTACGCCTTCCGCCTTCGTTCATTCATTTTTGGGGTTAACCTATTTGAcgaattgtattttgaaatattctgTATTGACTATTCATTTGTACAGGAAAGTTATAGCTAGGTCTCTGTGGCCGAGTCTGTTGCGTTGACGTCACACACCCTTCGAATTCATAATTCCAAATATGAATTCATACTTTGAAATACATAGATTCAATTGAGTGTGAATTAAATTAGCATAGGCTACACTGTGATGACAGACCATTGTGTGTGACGACAAGCGTTGCTGAAGAGGGAAACACACTTTGCGCTTCAGTCCAGTAGTTCGTTTTCCCGGCGCGTATTGACTGCGGGCAGACCGCGCACACACCGGGACGGCCGCAGCAGCACGATGGGCTTCCTCGGCCGGGCAGAGAGGGTGTGTCGCTTCATGCCCATCGTGGTCAACACGGTGCTCGTCCTGTCCATCACGGCGGAGGTGAGCTACCTGGTGGTGGTGGAGGCGCCGCGGGAGCCGGGGCAGCAGCGGGGCGAGTGGAGCGCCGTGTGGAAGGCGGCGCACCTGGGCGCGCAGTACTTCATGCTGGGCAACATCGTGTGGAACGCGTCGCTCTTCCTCCGCACTAGCCCCAGCATCCGAGGGGTGTTCCTGGGCAGCGATGGGGTGGGGCAAGGCTGGAGGTACTGCTACAGCTGTGAGAGCCACACCCCCCCGCGCTGCTCGCACTGCTACGACTGCAAGGTGTGCGTCCTGCGGCGCGACCACCACTGCGTCTTCTTTGGCCAGTGCGTGGGCTTCCGCAATTACCGCTACTTCCTGAGCTGCCTGCTGTTCATGTGGGCGGGGCTGCTGTATGCCGTGGTGCTCAATGCCGAGGTCTTCTTGGTCATCCTGAAGGAGGGGGTCACTCTGCACAGCTTCATGCTGCTGCTCGTCCCCTGGATCATGCTAGTGACAGCGAGGGCGTTTGCGTTCGCCTTCATCGCGGACACCTGCGTGGTGGGCTTCCTGCTAGTCGCGGCCTTCCTGTTCTTCCACGTGGTGCTGATGCTGCGTGGCCAGACCACCCGTGAATGGTACTCCACCCGCCGGCCCTACAGCCTGGGCTGGCGCCGCAACATCAGCGAATGCCTGGGCCAGCGCTGGTACCTGGCCTGGCTTTgccccctcatcccctctccgCTGCCCGGGGACGGTATCCACTTCCAGGTCACCGGTCCCCTCGATCAGGCCAACCCAGCCGTCCGGTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122570 lncRNA downstream 12341 10288026 ~ 10340868 (-) True G98269
TU122498 lncRNA downstream 130684 10173101 ~ 10222525 (-) True G98216
TU122493 lncRNA downstream 187812 10107233 ~ 10165397 (-) True G98211
TU122438 lncRNA downstream 277316 10026114 ~ 10075893 (-) True G98163
TU122439 lncRNA downstream 328133 10021351 ~ 10025076 (-) False AMCG00015479
TU122588 lncRNA upstream 22320 10378285 ~ 10380049 (-) True AMCG00015501
TU122626 lncRNA upstream 133614 10489579 ~ 10493106 (-) True G98314
TU122734 lncRNA upstream 311924 10667889 ~ 10704395 (-) False AMCG00015519
TU122740 lncRNA upstream 352456 10708421 ~ 10708752 (-) True G98399
TU122857 lncRNA upstream 492324 10848289 ~ 10849258 (-) False AMCG00015524
AMCG00015499 mRNA downstream 19072 10298043 ~ 10334137 (-) True AMCG00015499
AMCG00015494 mRNA downstream 82897 10267939 ~ 10270312 (-) True AMCG00015494
AMCG00015496 mRNA downstream 94120 10253692 ~ 10259089 (-) True AMCG00015496
AMCG00015495 mRNA downstream 141927 10200780 ~ 10211282 (-) True AMCG00015495
AMCG00015493 mRNA downstream 154607 10195564 ~ 10198602 (-) True AMCG00015493
AMCG00015501 mRNA upstream 23805 10379770 ~ 10385379 (-) False AMCG00015501
AMCG00015507 mRNA upstream 38479 10394444 ~ 10404856 (-) True AMCG00015507
AMCG00015506 mRNA upstream 75833 10431798 ~ 10437010 (-) True AMCG00015506
AMCG00015508 mRNA upstream 94264 10450229 ~ 10460735 (-) True AMCG00015508
AMCG00015514 mRNA upstream 137175 10493140 ~ 10505219 (-) True AMCG00015514
TU122572 other downstream 12341 10325999 ~ 10340868 (-) False G98269
TU122509 other downstream 154555 10196618 ~ 10198654 (-) False AMCG00015493
TU122879 other upstream 658660 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 658660 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 667204 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 877350 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 901313 11257278 ~ 11261168 (-) False AMCG00015535

Expression Profile