RNA id: TU122588


Basic Information

Item Value
RNA id TU122588
length 1765
lncRNA type sense_over
GC content 0.44
exon number 1
gene id AMCG00015501
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10378285 ~ 10385379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctGAGTCTGGACCCGGGCCTGCGGACCGAGCCTCTCCACCACCCGTTCTCCATCACTCACCTCATGGCTGCAGAGCTCCAGCACTGTAGTGCCCAGCGTGGTGAGGCGGGCCCCTACGAGGCTGGCACCTGCTACCCCGGGTACATCCCTGCCTCCTCATCCTCGGCACAACTGGCCAGCGTGTATTCTTACTCCTCTGGACGAGAGGTGGCACCCCTAGTGGGGGATGCCCCTTACTACTCCAGTATGTACTCAGTGCCCATTCTGAGCTCCTCCTGATGTGCCACCATGCCAGGctgtgccccccccaccccacagcaACACTGGTTTGCCACCTGTACGGGAGAGGGGGGGTGCAGAATAGGAGAATGACGTGCTGGTCCATTTCCCCCTCATAATAGACTGTGTCGCACCGAGTGGGACTTCTGTCAGTTAACGTAGAACTTGATCTTCAAAAGccttttacttaaataaatgccaaaCGGATGGAGCTGGGAACTTCTAGCAAGGAGGAGAAGAGAGCTGGCTGCTTGGGGCTCTGCAAATTCTTCACGTTACAGTGTTACAAACTCTCGCCTTCAGCCCCCGAAAGTGGTCTGCTGCTGGAGATCCAAGGACGTGAATCCCATGTGTGGTTTCAACAGAACGATGAGCATAAACAAATTCAAGACAATAATTCAAGACCATTTTAtcatgtttacatattttaatttattttctgcaaatatttTTCAACACGGATGTCTTTAGGTTCAGCGGTGACGGGGGTGCGAAGAGACACTAAAGACTGGCCAAATGCCCAGAATCAACTAGCCGAATGCTGCTTTTTCCCCTTTACCAGTTGTTCAAGGGTGGTTTAAGCTCAAGTGACTgatcagttaaaaaataaatatgtatatataacttctgaatgtgatttttatatCCTGTTTCGATTTGCCttgtttttcatcttcaaaATATTGTCTTCCGGGAAACAGTTCTGAGGACAGAAGGAGTGTATTTCCATGCATCCATCTCAAACACTGCAATCACCGGGGTCTCTGCCCAGAGTTGGTCAGGAGACTCAGAGAGCTTCTGAGACCAGGACTTTTGAAATCCAAAGTGACTTAAATGACTGTAACTGGACTGTAAATGATCAACTATATGATTTGCCAATGACATCACTGTAACTGACCCCAGATCTAACACTCACTCATACTCCAACCAGAATCACAGGGGTATGTCCTTGCCATATCTCTAATTACTGATGTTACTGATGTGTTGGACTTTTGAGGCAGATATTTGTACACGTTTCCCAATTGTGATTTGGATTGCAGTGTTTAAAAGGGGCAGAATGGGATGTAAAAATCCCAATGGAGGATAGGAGgtatgttttgatattttaactTTTGCCATTGGGTAGCTATTCAATGTTTTTGAAGAAATGCTCTTGATCAACCTCTCTGTACTCACAGTATTCCTTTTTTCACAATGTGATGTCATGTTAGAAACCCAGAAATAAAACCCATTCCACTTATGTCAAACTACCACAGGAGTGCTTGTTGTTTTATAACTGTAGCAGATCCCCCCACCTACATTAAGTTTGAAGTGCAGTATTTTTGTGAGCTTGCTCatttaacataacatttctAATCAGAAGGGATCAACGAGTGAccaattcaaatcaaattaaaagggACAACcacaaaatatttgatatttgctaattcaatttacatttgcTTAGAAAAGGGAATCCTGACACAACACACAGAATATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122570 lncRNA downstream 37417 10288026 ~ 10340868 (-) True G98269
TU122498 lncRNA downstream 155760 10173101 ~ 10222525 (-) True G98216
TU122493 lncRNA downstream 212888 10107233 ~ 10165397 (-) True G98211
TU122438 lncRNA downstream 302392 10026114 ~ 10075893 (-) True G98163
TU122439 lncRNA downstream 353209 10021351 ~ 10025076 (-) False AMCG00015479
TU122626 lncRNA upstream 109530 10489579 ~ 10493106 (-) True G98314
TU122734 lncRNA upstream 287840 10667889 ~ 10704395 (-) False AMCG00015519
TU122740 lncRNA upstream 328372 10708421 ~ 10708752 (-) True G98399
TU122857 lncRNA upstream 468240 10848289 ~ 10849258 (-) False AMCG00015524
TU122894 lncRNA upstream 763469 11143518 ~ 11149864 (-) True G98510
AMCG00015500 mRNA downstream 22320 10353209 ~ 10355965 (-) True AMCG00015500
AMCG00015499 mRNA downstream 44148 10298043 ~ 10334137 (-) True AMCG00015499
AMCG00015494 mRNA downstream 107973 10267939 ~ 10270312 (-) True AMCG00015494
AMCG00015496 mRNA downstream 119196 10253692 ~ 10259089 (-) True AMCG00015496
AMCG00015495 mRNA downstream 167003 10200780 ~ 10211282 (-) True AMCG00015495
AMCG00015507 mRNA upstream 14395 10394444 ~ 10404856 (-) True AMCG00015507
AMCG00015506 mRNA upstream 51749 10431798 ~ 10437010 (-) True AMCG00015506
AMCG00015508 mRNA upstream 70180 10450229 ~ 10460735 (-) True AMCG00015508
AMCG00015514 mRNA upstream 113091 10493140 ~ 10505219 (-) True AMCG00015514
AMCG00015515 mRNA upstream 150004 10530053 ~ 10538036 (-) True AMCG00015515
TU122572 other downstream 37417 10325999 ~ 10340868 (-) False G98269
TU122509 other downstream 179631 10196618 ~ 10198654 (-) False AMCG00015493
TU122879 other upstream 634576 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 634576 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 643120 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 853266 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 877229 11257278 ~ 11261168 (-) False AMCG00015535

Expression Profile