RNA id: AMCG00015530


Basic Information

Item Value
RNA id AMCG00015530
length 4479
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00015530
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10977415 ~ 10985210 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatcagcaggggatcaaatacttttttcccccactgtatgtgctGGAGACCACCAGTATTAATCAATAACAAGCATTTTATCCAGTCTTCCATGTTATCAGGGCATTTACGGAGTTAATAATTGAGAGTTGGCttaattaagtgtttgtttGGCATTGATTGTAAAGAGTGCTGATCTACCAGACGTCCAACTTAGATCTGCGCTAGCCCCCCGCAACAACTTAACGCGTGTCGCCTATTGACATACTGTTTATCTATAAACGGCTTTATTCAAACCCCAGGTGAACCTcccccctttctccagacatggACAAGAGCAACACGGTGAAGATTTTCGTGGGGAACCTGGCGCTGGAGACCTCCCAGGAGGAGCTGTCTGCCATCTTCGAGCCATATGGCACCGTGGTGAGCTGCAGCGTCCTGCGGCAGTTTGCCTTTGTGCACCTGGCCGGCGAGGCAGCGGCAGCCCGGGCCATCGAGGAGCTGAATGGCCGCGAGTTCCGTGGCAGGAACCTGGTGGTGGAGGAGTCCAGGGGCCGGCCACTGCACTCCACCAAGGTCTTCGTGGGCAACCTGAGCGGCATGTGCACGGCCGAGGACCTGCAGGAGCTCTTCCAGACCTTCGGCAAGGTACTGGAGTGTGACAAGGTCAAAGGTTGCAACCAAACTAGCGCAATGGGAAGACAGCTAGCACCATCCGCAAACAGCAGAGTACCACAACGTTACGCCTTCGTCCACATGGAGAACAAGGAAGACGCGCTGCAGGCAATCGAGGCTCTGCATGGCACCTCCTTCAAGGGACGCCCGCTGTCTGTGGAGCTGTCCAAGGTGCAGCCCAGCAAGCAGGGACCTACAGGCAAGATCCCCTGCGTGAGCTGTGGCAAGCAGGGCCACTACGCGGGCGAGTGCCCCCTGACCAAGCCCTCGCTGGAGCAGTACCAAAGCCAGGCGGCTGTAGTGGCCGCTGCAGCAGCCGCCGCTGCAGGACTCCCCCTGCAGGTGCAGCAAAGTGTGCACAACTCGGTCTACAACACCCCCGTCTTCGACCCCACCTATGCGGCGCTCAGCGGCCTGTCGGCGGCCATCGGCTCGGACGGCAACCCAGTGAGCCCAGCCGTGTACGGGGCCCTCGCCAGCCAGGTGTACGGCACGGTGGCCAACCAGCTTTACAGCACACCAACCAGCCAGGCCTTGACCACAGGAGCCAGCCAGGTGTACAGCCCAGTCGCCAACCCCGCCTACAGCCAGGTGGCCAACAACACGGCAGCCGCAGCAGCTGTGGCAGCcgctgctgccgccgccgccgcctaCAGCGGCCAGGTGTACCCGCCGGGTGTGGGACCGTACATGAGCAACCCTGCGGGGGAGACACCTGCAGCCTCCGCCGCAGTGACCCCAGCCTACAGCGTGGCGCCAGCCCTGTACAGCGCCGGAGGGGGTGTGTCGGTGTACGGAGCGGTGGCGGGCTCCGACCCCACAGCCCAGGCTATCTTCGAGGCGGCGCGGGCACACTACTTTGCGCAGGGGCAGCAGGTCCTGGCCGAGCAGCAGGCGGGCTCTGCCTCCTCCAAGTCAGGGGACCGAGACCGCAGCCCTGTGCGCCGCTCAGGCCCACTCCTTCCCGACCCGCTGCCCAAACCCTACCTCTACCAGCGGCCCAAGCGCAGAGCCCTCCTGCCCACTCCGACCAGCCGGCCCGAGGACGCCGTGGCCACGGAGGAAGACCCCTTCGCCAGGTACTACGCAGAGTATTACCAGCAGTACCAGTCCCAATACCAGTCCCAGTACCAGTACCCACCTCAGTACCAGTACCCGTACCCGTACCCATCGCCAGCTGCAGTCCCCGCCGTCCCCGCCGTCCCGGCCCCCTCCTCCAGTCCCCTGGAGGCCCAGCAGCTGGCCGCACCCAGAGCGTATGAGCCGCCGCAGCCGCCGCCGCGCAAGGAGCCCCTCCTCCGCCGCCCCGACCTCCCCCCCCAGCACACGCCGGAGCCCCCCTTCCGATAACCGCCGTCCGCCTCCTGGAGGGActgtgtgtacgtgtgtctGGCCGCCGGTGTGTTTGAGGAGGGGGATAGGGGAGTTGGGATGTggctgtctgtttgtctgtctgtctgtctgcctgctcTGGAGTTGACCAGTTTCCAACCTTGGTTGCCTCTGGGCCTCCCCCAGCCAAACACACCCTGGCAGTCCAGCCCTGGTTTAAAACAATCGAGCTGCTGTTTGCTTTTGTTGGAAGAGGAAACATATAGTGGTTAGTTTCTTAGAACCTCTTGGGTATTCAAGTACCTTCAGGATTGCAGATGGGAGCTTCTCCCTTGTATTGACCTTGAGTTGTTACAATTAGTTTAAtattggtggggggggggggggggggggggggggggttacaacTGCACACAAGCCTTCAGTAGCCTTACTCCTAGGATTTCTTACATCGGGTTCAGtttccaattaatttaaaatggggTGGGTTAGGGTTTATGCAATCACACAAACCTTGGTCTCAGCCTTactcctatttttttttttcttacatcaggttgaatttaaaattaatttaagatgGGGGAGGCGGGGGTTATGCAACcatacaaatgcaaacacaaactTTCGGCACAGCCTTCCTCCTAGGATTCCTTACATCAGGTTCGGTTTACCCTGGGGTGCGGTGGGGCAGGTTCATCATGTgttgtgctttaatttcaacTTTTGAAAGTGGGCTTGCTCTGAACATAGTGtgagtgcagttttttttttttactttgatttaGCCTAGTCCACAGTATTTGAGCTTCATCGTTTTGTCCAATCTACACATGGTATTGAGAAGTTTTCTTGGTTTGGTTTGGAGGTGAATACCTTCATGTGGACTTTGAAGGCGATAGACCGTGTTCCTCACCAGCTGTGTGGTTACAAGTCACAGTTCTCTGTACCAGGCTGTGGTGTGGTtgggaccagggttggacagtcttggtatgtttgtgtgtgtctgtgtgtgttttgaatgaGGGGGTAAAGGTGCTTCTAAAGACCCAAATCCAAGAGTACATAAAGCCCCCAGCTCCAACTCTCACGACGACTGCGAATGCATTGAGCTCTCCCACAACATCCAACACACCGCCACCCCCGGAACGCTGACAGAAATTTGTTCCCCCCCCAACGCCTTCTCCATCTGGGGTGTAGTCACGGGTGTAGTGCATCAGGAGACATTAGACTTGGAGATTTGGTGCAGCCAGACAATACTTTGGTAAAATGTTGTCCAAACCACACTGGCTGTAGCAGTGGGGCTGAAAATGCTCAGTCTCTTTCTTACTACCCAAATGGCAGCATCatgcaggttttgttttggcatTCGTGACTTTTACCCCTCTTCTAGAGTACAGACCATAATTCGCTAACGACTTTTTGCCCGTGTCTCGTACCATGTCTCGCAAGTGTGAATAGCGATGTTGACTtatctatatttttaagttgttgttttttttattacaaatgtaaatgcgCTTTGTAAAAGGCACCCAAGCACAGGataggataaaaaataaaaataaataacgaaaGCAAGctaaaccttttctttttgcaaCTTCTCAAACAAGAAGAAATCTGTCTCAATGTTCCGTGTTATTTCGAGTCTGAGTTAGTGATAGTCATTGAACTTGATGACATACCAAAAGGGTCGGGGGTTTCAGATCAGGATTTGGCCCATACCCCAAATTCTGTGAGGTGCTGCAGCACCTTAACCCCTTGCGTGCTGAGCAAGGCAGGGGAACGGAGGTTTCTCTCAGTGTTCTACAGTGTCGCACCGCATCCTGACAAACCGGCCTGCGGACTTCAGCCCAGGTGCTCGTTTtaatttgcacacacacacacacgcacacactcgcaCCCTCTTTCTACCTCTCTCTCCATGCATTAGCTTTTGTTCATCTTTCTTCTTCAAATGCTATTATGCTGTCATCGCCATGTTGGGCAGTTCTGACATTGATACACAACAGCACATCTTTGCTTTTTATACATCTTCAATCCACCATCGCCTCCGAGACATCGATCTAATGCACTCTTGCCCTCTAGACGTAGTCCATTAGTGAATTGTCCAAGGAGTCATTCTTGTAGATATTGTgtatgttttcctttcctttttattttcatttttgaccTTACCCAACCATTGTTGAATTGGTCTATtcactatatattattattattatgggcaGGGAAGTGAGGATATTGTGCACATGTTTAAAGACAGatagactttttttcttttttgaggttctgtttattttttgttatgatcctttgtttttgttttttgccaatatatattttttaatgtactcgAAAATAAAGAATGTTCTGATCAGTATTATATATAGGGCttggattttgtatttttgtttattattatttatacatttatatcttCCAGCCATTTCTCGATTCTACAAGCGGGagaatggtatttttttt

Function

GO: NA

KEGG:

id description
K13189 RBM14; RNA-binding protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122857 lncRNA downstream 128157 10848289 ~ 10849258 (-) False AMCG00015524
TU122740 lncRNA downstream 268663 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 273020 10667889 ~ 10704395 (-) False AMCG00015519
TU122626 lncRNA downstream 484309 10489579 ~ 10493106 (-) True G98314
TU122588 lncRNA downstream 597366 10378285 ~ 10380049 (-) True AMCG00015501
TU122894 lncRNA upstream 158308 11143518 ~ 11149864 (-) True G98510
TU122914 lncRNA upstream 347453 11332663 ~ 11334847 (-) True AMCG00015540
TU122937 lncRNA upstream 368573 11353783 ~ 11357765 (-) False G98543
TU122939 lncRNA upstream 392803 11378013 ~ 11386199 (-) True G98543
TU122994 lncRNA upstream 562425 11547635 ~ 11547875 (-) True G98591
AMCG00015531 mRNA downstream 35920 10924861 ~ 10941495 (-) True AMCG00015531
AMCG00015524 mRNA downstream 127994 10843685 ~ 10849421 (-) True AMCG00015524
AMCG00015527 mRNA downstream 137563 10817679 ~ 10839852 (-) True AMCG00015527
AMCG00015525 mRNA downstream 161119 10810529 ~ 10816296 (-) True AMCG00015525
AMCG00015523 mRNA downstream 173888 10798420 ~ 10803527 (-) True AMCG00015523
AMCG00015534 mRNA upstream 4672 10989882 ~ 10994885 (-) True AMCG00015534
AMCG00015533 mRNA upstream 12339 10997549 ~ 11007375 (-) True AMCG00015533
AMCG00015532 mRNA upstream 27440 11012650 ~ 11024613 (-) True AMCG00015532
AMCG00015536 mRNA upstream 193882 11179092 ~ 11183890 (-) True AMCG00015536
AMCG00015535 mRNA upstream 200650 11185860 ~ 11260595 (-) True AMCG00015535
TU122572 other downstream 636547 10325999 ~ 10340868 (-) False G98269
TU122510 other downstream 778761 10196618 ~ 10198654 (-) False AMCG00015493
TU122879 other upstream 29415 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 29415 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 37959 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 248105 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 272068 11257278 ~ 11261168 (-) False AMCG00015535

Expression Profile