RNA id: AMCG00015531


Basic Information

Item Value
RNA id AMCG00015531
length 3567
RNA type mRNA
GC content 0.54
exon number 21
gene id AMCG00015531
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10924861 ~ 10941495 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agactttCACAGCCTGGTGTAACTCTCACCTGCGTAAAGCCGGTACCCAGATCGAGAATATTGAGGAGGACTTCAGGAATGGGCTGAAACTCATGCTGCTGCTGGAGGTCATTTCAGGTGAGAGGCTGCCCAAACCAGACAAAGGCAAGATGCGCTTCCACAAGATCGCCAATGTCAACAAGGCCCTGGACTTCATCTGCAGCAAGGGGGTCAAGCTGGTGTCCATTGGAGCTGAGGAGATCGTGGATGGCAATACAAAGATGACTTTGGGTATGATCTGGACTATCATCCTGCGCTTCGCCATTCAGGACATATCTGTGGAGGaaaccTCGGCCAAGGAGGGGCTGCTGCTGTGGTGCCAGAGGAAGACTGCCCCCTACCGGAATGTCAATGTTCAGAACTTCCACATCAGCTGGAAGGATGGCCTGGCATTGTGCGCTctcattcacagacacagacctgATCTCATTGATTACTCCAAACTGAGAAAGGATGACCCCATCGGCAATCTGAACACTGCCTTTGAAGTGGCCGAGAAGTTTCTGGATATCCCTAAAATGCTGGACGCTGAAGATATTGTGAACACCCCCAAACCGGATGAGAAAGCCATCATGACTTACGTGTCCTGCTTCTACCACGCCTTTGCCGGAGCAGAGCAGGCCGAGACTGCTGCAAACAGGATCTGCAAAGTTCTGGCTGTTAACCAGGAGAACGAGAAACTGATGGAAGAATACGAGAAGCTGGCAAGCGAGctgCTGGAGTGGATCCGTCGCACCATCCCCTGGCTGGAGAACCGCGCGGCCGAGCAGAGCATGCGTGCCATGCAGCAAAAGCTGGAGGACTTCCGTGATTACCGCCGTGTGCACAAGCCCCCCCGCGTGCAGGAGAAATGCCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAGCTGCGCCTCAGCAACCGCCCCGCCTTCATGCCCTCCGAGGGCAAGATGGTCTCGgacattGCCAATGCCTGGAAGGGTCTGGAGCAAGTGGAGAAAGGCTATGAGGAGTGGCTGCTGACTGAGATACGGAGACTGGAGAGACTCGATCACCTGGCTGAAAAGTTCAAGCAGAAGTGCGCCCTGCATGAGAGCTGGACCACCGGGAAAGAGGATCTGCTGTCCCAGAAGGACTACGAGTCGGCCTCGCTGATGGAGATCCGCGCCCTGATGCGGAAGCACGAGGCCTTTGAGAGCGACCTGGCTGCCCACCAGGACAGAGTGGAACAGATTGCCGCCATCGCACAGGAGCTcaaTGAACTGGATTATCACGATGCTGCCACTGTCAACGCCCGCTGCCAGGGCATTTGTGACCAGTGGGACAACCTTGGCACCCTCACCCAGAAGAGGAGAGACTCCCTGGAGCGCGTGGAGAAGCTATGGGAGACCATCGACCAGCTGTACCTGGAGTTCGCCAAGAGGGCGGCGCCCTTCAACAACTGGATGGACGGAGCCATGGAGGACCTGCAGGACATGTTCATTGTGCACAGCATTGAGGAGATCcagAGCCTGATCACAGCCCACGAGCAGTTCAAGGCCACCCTTCCCGAAGCAGACAAGGAGCGCATGGCCACTATGGGCATCCAGAACGAGATCATGAAGATCGCCCAGACCTACGGCATCAAGTTGTCTGGCGTGAACCCCTACACCAACCTCTCCCCCCAGGACATCAGCAACAAATGGGAGGCGGTCAAACACTTGGTTCCCCTCAGAGACCAAATGCTGCAGGAGGAGGTGGCACGGCAGCAGGCCAACGAGAGGCTCCGGCGCCAGTTTGCCGCCCAGGCTAACATCATTGGACCCTGGATTCAAACCAAGATGGAGGAAATTGGTCACATCTCAGTGGACATGGCCGGGTCCCTGGAAGATCAGATGAACAACCTGAAGCAGTACGAGCAGAACATCATCAACTACAAGTCCAACATTGACAAGCTGGAGGGCGACCACCAGCTCATCCAGGAGGCCCTGATCTTCGACAACAAGCACACCAACTATACCATGGAGCATATCCGTGTAGGCTGGGAGCAGCTGCTGACCACCATTGCCCGCACCATCAACGAGGTGGAGAACCAGATTCTGACCCGCGATGCCAAGGGCATCAGCCAGGAGCAACTCAACGAGTTCAGGGCCTCCTTCAACCACTTCGACAGGAAGAGGAATGGCATGATGGACCCAGACGACTTCCGCGCTTGCCTGATCTCCATGGGCTACGATCTGGCACAAGAGGTGTCCTACTCTGTGCCGCTGCCACGTGAGTCGTCCTCACCATGCTGCGTCCGCTGTGGTGAGGTGGAGTTTGCCCGCATCATGACCCTGGTAGACCCCAACAACACAGGCGTGGTGACCTTCCAGGCCTTCATTGACTTCATGACCAGAGAGACGGCTGAGACAGACACTGCCGAACAGACCTACATCACAGTGGACGAGCTGCGGCGGGAGCTGCCCCCAGAGCAGGCAGAGTACTGCATCAGCCGCATGACCAAGTACATCGGCTCGGACGCGGCGCCCGGAGCCCTGGACTACATCTCCTTCTCCAGCGCCCTGTATGGGGAGAGCGACTTGTAAAGCACACCCACAaccccgcccccccctccctcaTCCCCCACCTCGTCCCTTGTCCTCTACTCTCAtcccccagcccccccctcCCACTCCCCCACCCATCCCATCCTGGCTCTGAGATACACAGAGATAGGAAGGCTTTGCTCAgactcctccacacacacacacacatgcgcacacgcgcacacacacacacacacacaatttgcaCATGCCATTAGCAGATTACCATCGGAAAGGCTGATGTACCCCTGATGTCACTGTAATCACCCTGGCAGGGATCCCCTATGTGAaatctgtcattttctttcttaaatccCTTCTCCCATTGACATCTTCCACCCAACAGTACAGGCTCGGATTTCACGTTCAGCAATTGTGGTAACAAGGCTTTAATGACGTCTCAATTTCTAGTCCCCtataccttttttatttatctatttatttattggtttgtgtTCGTTTTCACCTCTGTTATCCTATCAGTATATGCTGAGCAAACCCTCCCTCTCCCTGGGGTTTTCGGGGCAagaaagcaaatcaaaataaataaatctctgaaagagaaaaaggcaaAGTACCTTACCTAATATTGGCTGATTACTTTTTTGCAGATGcatgcagtgtttgttttagaaaagcTATCGATGGTCACTTCTCCTCACGCTACTGCACCATTGTCCACCTTCTTTAGGCCTGTGATAAAGTCCCCCTAGCAGAGGTACTGTGATCTGTCACGTATGTCTTAACAGTAGTCAGGAAGCTGTTGACAACAGAAGAACataatcaataatttaaaaaaaaaccgaatcaaataaataaataagggaaaTCAGATCTGAAGCTCTGATTAtcatatattttcttctattcTTGTTTGTGGCTAAGCAGGTGTGACACTGAGATGAGCGTGTGGTAGCCATGGTTATGGGGCGGGGCAGGGGAGGGGTGGGGTATAGTAGGGTGGGGTAGGGGGGAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K21073 ACTN2_3; actinin alpha 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122857 lncRNA downstream 75603 10848289 ~ 10849258 (-) False AMCG00015524
TU122740 lncRNA downstream 216109 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 220466 10667889 ~ 10704395 (-) False AMCG00015519
TU122626 lncRNA downstream 431755 10489579 ~ 10493106 (-) True G98314
TU122588 lncRNA downstream 544812 10378285 ~ 10380049 (-) True AMCG00015501
TU122894 lncRNA upstream 202023 11143518 ~ 11149864 (-) True G98510
TU122914 lncRNA upstream 391168 11332663 ~ 11334847 (-) True AMCG00015540
TU122937 lncRNA upstream 412288 11353783 ~ 11357765 (-) False G98543
TU122939 lncRNA upstream 436518 11378013 ~ 11386199 (-) True G98543
TU122994 lncRNA upstream 606140 11547635 ~ 11547875 (-) True G98591
AMCG00015524 mRNA downstream 75440 10843685 ~ 10849421 (-) True AMCG00015524
AMCG00015527 mRNA downstream 85009 10817679 ~ 10839852 (-) True AMCG00015527
AMCG00015525 mRNA downstream 108565 10810529 ~ 10816296 (-) True AMCG00015525
AMCG00015523 mRNA downstream 121334 10798420 ~ 10803527 (-) True AMCG00015523
AMCG00015526 mRNA downstream 129593 10776830 ~ 10795268 (-) True AMCG00015526
AMCG00015530 mRNA upstream 35920 10977415 ~ 10985210 (-) True AMCG00015530
AMCG00015534 mRNA upstream 48387 10989882 ~ 10994885 (-) True AMCG00015534
AMCG00015533 mRNA upstream 56054 10997549 ~ 11007375 (-) True AMCG00015533
AMCG00015532 mRNA upstream 71155 11012650 ~ 11024613 (-) True AMCG00015532
AMCG00015536 mRNA upstream 237597 11179092 ~ 11183890 (-) True AMCG00015536
TU122572 other downstream 583993 10325999 ~ 10340868 (-) False G98269
TU122510 other downstream 726207 10196618 ~ 10198654 (-) False AMCG00015493
TU122879 other upstream 73130 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 73130 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 81674 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 291820 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 315783 11257278 ~ 11261168 (-) False AMCG00015535

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00065468 False 4785 mRNA 0.47 21 NC_007118.7 7048245 ~ 7131865 (+)
grasscarp (Ctenopharyngodon idella) CI01000343_00521663_00538782.mRNA True 3762 mRNA 0.48 20 CI01000343 521663 ~ 539985 (+)