RNA id: TU122907


Basic Information

Item Value
RNA id TU122907
length 585
RNA type TUCP
GC content 0.45
exon number 5
gene id AMCG00015535
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11185860 ~ 11261168 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NGTCTTCTCTGTACAATGATGAGAAGTGGTCCCTTCAAGTGGAGCAGAAAGAGGCCGAGATGGTTGAGAAACTCACAAGTAAAGAGATTACTTTCCAAGACGAATTCAACAGGATATATGAGGCCGCAAGGGACAGTAACTTCTCTCTGACAGACATCTGGGCTGCCCTGTATGTTTATCCTGTCTTGAGAGATaaagaaacaaagagtgTTTCTGATCAGACAGATAAGGAAATGCTGAATCCCTACCCAATCTATTCCGCCATTGACAGATGGAGACTAGAGAACAAAGACAAACATGACAAGGgAATCTGGTTCGAGATCACCCGCCATGAGTCTGGCTACCCGGGGTGTGGTGCCTTCATAGAAACGTCAAAGTTTGGCAGCATTTTCAAGGAAGGGGAAATCCTTGAGCAGCGGGATGAAATGGACCTGCTGTACCTGAAAGgATTGTGTGGCAGTGCCTTAGGAAGCTGGGAGGAGAGCAAGAAATTTATCACATCACTTATCAAAGGTTGGATTAAGTCCATTCCCGGGTTCAATCGAATGTTACAGGGAAGGGCAACAAATGAATCTGTTTCTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122894 lncRNA downstream 83451 11143518 ~ 11149864 (-) True G98510
TU122857 lncRNA downstream 384057 10848289 ~ 10849258 (-) False AMCG00015524
TU122740 lncRNA downstream 524563 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 528920 10667889 ~ 10704395 (-) False AMCG00015519
TU122626 lncRNA downstream 740209 10489579 ~ 10493106 (-) True G98314
TU122914 lncRNA upstream 71495 11332663 ~ 11334847 (-) True AMCG00015540
TU122937 lncRNA upstream 92615 11353783 ~ 11357765 (-) False G98543
TU122939 lncRNA upstream 116845 11378013 ~ 11386199 (-) True G98543
TU122994 lncRNA upstream 286467 11547635 ~ 11547875 (-) True G98591
TU123032 lncRNA upstream 1138565 12399733 ~ 12405371 (-) True AMCG00015557
AMCG00015536 mRNA downstream 49425 11179092 ~ 11183890 (-) True AMCG00015536
AMCG00015532 mRNA downstream 208702 11012650 ~ 11024613 (-) True AMCG00015532
AMCG00015533 mRNA downstream 225940 10997549 ~ 11007375 (-) True AMCG00015533
AMCG00015534 mRNA downstream 238430 10989882 ~ 10994885 (-) True AMCG00015534
AMCG00015530 mRNA downstream 248105 10977415 ~ 10985210 (-) True AMCG00015530
AMCG00015541 mRNA upstream 10371 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015540 mRNA upstream 73211 11334379 ~ 11345490 (-) False AMCG00015540
AMCG00015557 mRNA upstream 1144019 12405187 ~ 12430648 (-) False AMCG00015557
AMCG00015556 mRNA upstream 1201888 12463056 ~ 12469988 (-) True AMCG00015556
AMCG00015560 mRNA upstream 1220554 12481722 ~ 12507107 (-) True AMCG00015560
TU122572 other downstream 892447 10325999 ~ 10340868 (-) False G98269
TU122510 other downstream 1034661 10196618 ~ 10198654 (-) False AMCG00015493
TU122938 other upstream 92615 11353783 ~ 11386199 (-) False G98543
TU122943 other upstream 153199 11414367 ~ 11416662 (-) True G98546
TU123499 other upstream 2196959 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 2410147 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 2580061 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile