RNA id: AMCG00015540


Basic Information

Item Value
RNA id AMCG00015540
length 789
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00015540
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11332663 ~ 11345490 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAAGGTGTGGCCAGGCGTGAGATGACGGAGTTCTGGCAGGAGCATTCCCGAGAGGCCACGGTGGAGGAGATGATGCTGGACTCCAGTGCACAGCTCCTGTCCAAGAACGAGCTGCCAGAGATCCTGTCGCTGCTGCCCAACCTTGGGGGGCTCACCATGCTGGAGCTGGGGGCCGGCATAGGGCGTTACACTGGACACCTAGTGAAGAAGGCGCGCCATGTGACTGCAGTGGATTTCATGCAGACGTTTGTGGACAAGAACAGGCAGGACAACGGCCACCACGGCAACGCAGAcTTTGACCTGATCTTCTCCAACTGGCTGCTGATGTACCTGACTGACGAGGAGCTGCTCTCTCTCACCGAGCGCATGCTGAGCTGGTTGAGACCTGGGGGGTACCTCTTCTTCAGGGAGTCCTGCTTCCACAAATCAGGAGACAGCAAGGTCAGCTTCAACCCCACCCGCTATCGTTCTCCAGCCAATTACAACCACCTGGTGACATCAGTGGTGTGGGAGGAGCTGGAGTCCAGTGGGCGGAGCTATGGCTTTGACATTGTCATGACCAAATCGACGAGGGCTGATAAAAGCTTGGGATTTGTGCGTGAGGGACTCTGTGATTGCCTTATTGTTACGGCCCTGTGCAGTGTGaccatatcGTGGCTTAAGCCTGGAGGGAAGGTGCTGATCAGTGACTACTGTTGTGGGGAGCAGCCATGGTCAACCCACTTCCAGGAATACGTCAATCAAAGGGGCTATATCCTCTACACGCCCCAGCGCTATGGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122894 lncRNA downstream 184515 11143518 ~ 11149864 (-) True G98510
TU122857 lncRNA downstream 485121 10848289 ~ 10849258 (-) False AMCG00015524
TU122740 lncRNA downstream 625627 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 629984 10667889 ~ 10704395 (-) False AMCG00015519
TU122626 lncRNA downstream 841273 10489579 ~ 10493106 (-) True G98314
TU122937 lncRNA upstream 8293 11353783 ~ 11357765 (-) False G98543
TU122939 lncRNA upstream 32523 11378013 ~ 11386199 (-) True G98543
TU122994 lncRNA upstream 202145 11547635 ~ 11547875 (-) True G98591
TU123032 lncRNA upstream 1054243 12399733 ~ 12405371 (-) True AMCG00015557
TU123059 lncRNA upstream 1100508 12445998 ~ 12446953 (-) True G98648
AMCG00015541 mRNA downstream 11879 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015535 mRNA downstream 73784 11185860 ~ 11260595 (-) True AMCG00015535
AMCG00015536 mRNA downstream 150489 11179092 ~ 11183890 (-) True AMCG00015536
AMCG00015532 mRNA downstream 309766 11012650 ~ 11024613 (-) True AMCG00015532
AMCG00015533 mRNA downstream 327004 10997549 ~ 11007375 (-) True AMCG00015533
AMCG00015557 mRNA upstream 1059697 12405187 ~ 12430648 (-) False AMCG00015557
AMCG00015556 mRNA upstream 1117566 12463056 ~ 12469988 (-) True AMCG00015556
AMCG00015560 mRNA upstream 1136232 12481722 ~ 12507107 (-) True AMCG00015560
AMCG00015562 mRNA upstream 1227973 12573463 ~ 12574052 (-) True AMCG00015562
AMCG00015561 mRNA upstream 1277768 12623258 ~ 12640668 (-) True AMCG00015561
TU122907 other downstream 73211 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 73211 11257278 ~ 11261168 (-) False AMCG00015535
TU122879 other downstream 88817 11014625 ~ 11245562 (-) True G98502
TU122938 other upstream 8293 11353783 ~ 11386199 (-) False G98543
TU122943 other upstream 68877 11414367 ~ 11416662 (-) True G98546
TU123499 other upstream 2112637 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 2325825 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 2495739 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile