RNA id: AMCG00015574


Basic Information

Item Value
RNA id AMCG00015574
length 4033
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00015574
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12938665 ~ 12944741 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTGTGAAAGCAAACCTACGCCACTGAACATACTTTTAGGCTATTGCACATTGTCGTCGCatgtagagaaaaaaacaagtgtacATCATAGTCGGACAGGTAGGAAACACAAATATCGTTATATAGACATACTAAAATTTAGAGAAGCACACACATGGCAAATTCCTAGtctacagaaacacacacaccaaattaCGTTTACAAAAAAGGAAGTGATCCTCTTCAAAGTTTCTCTTTCAGTGTCACACGAGCAATCACGCACAACAAAGTGCGCTAGCTAGCGAGATCACAGCTTATGGGGGCTTCCCATTAAAATAGCATGACTTGATGGACTTTAAATAAACGAGTGATATTACATATAGACTAGCCTACAATTCATATTTACAGAAAATTGTACAAGTTTAACctcttgcatttaaataaagaaaaataagtatatagagagaaaaacagtctacttttttattattatttgttaaagaAAACGTAGCCAGACATCATGTCGATTTGCGTTTCATTCTCACTATTAATGACCCTCTTGATCTGGGCACCAAAGTGCAACTGCCGTCCTCTGGCTATGAGAACCGACAGCGGAATCCGAGAGTGCAAGAAGACCATGGCGAATACCCCAGCGCTGGAGGTGCTGCCCGGGGGCGGCTGGGACAACATCCGCAACCTCGACATGGGCCGGGTGATGAATCTGACCTATTCCCTGTGTCAGACCACTGAGGACGGCGCTTATCTCATCCCCGACGAGGTGTTTGTGGTCCCACAGAAAGTCAGCAATGTCGAGACCAATTCAGAGATAATCGAGAGCTGGCTGGACCAGCGCAGCTCTGTGGCCAGCTCTATCAATACTGATGTCTCTTTTTCCGGCGTCCTCAATGGCAAATTCTCCACCGAAAATGAGCGAATGAAAACGCACCAGGTGCGGGAGGGCTCCTTCACTACCCGAGTTCAGGTGCGCAACCTAATCTACAGTGTCAAAACAATACCAGGCTTCTCTTTTGACCCACGGTTCGAAATGCGAGTGGGGGAAATTGCGAGTGCCCTGGAGAACAATCAGACACACCAAGCCGCCTTCCTCTCTGAGACACTGGTACTGGAGTATGGCACTCATGTCCTGACTTCGGTGGACGCTGGTGCTAGCCTGGTGCAGGAGGACTATGTCCGTGCGTCCTTCCTTTCTGATGGGAATGTGGTCCGTTCCTCCATCAGTGCATCAGCCGGGATCAACTTCTTCAATAAGGTTAACATTGGGTTTGACTGGAATAAGTCAAATACAGATTCCCTCACAAAAGGCTACCAGGGCAACACTACCTATTCTCTGACCCAGGGCCATGGTGGAGTGCCTTTCTACCCTGGAATCACCTTGCAGAAATGGCAGGAGAACACTGCTAACAACCTGGTGGCTATTGATCGCTCTGGACTCCCATTGCATTTCTTCCTTAACCGAGACACCCTCCCAGATTTGCCAGAGCCTGCAGTTGAGAAGCTGTCAAAATGTGTCAGTCAAGCCATTGAACGCTACTACATGATCAACACCCATCCAGGCTGCGTTAAACCTGACTCCAAGAACTTCAACTTCCAGGCCAATGTAGATGATGCTTCTTGTGATGGCCCAGTCACTAATCTTAGTTTTGGAGGTGTTTACCAGCAGTGTACTGAGCTCAGCCAAGACGCTCGGATCCTCTGCCAGGCGCTGGCCCAAAAGAACCCACAGACAGGCTCCTTCTCATGCCAAAAGCCCTATCAGGCAACCCACCTACGTTCAGAAGTGAAGGAGGAAGGGTATAGCCAGTTAGAGTGCCATGTAGAGTGCCACAGCTGCTGGCTGTTCTTCTCCTGTTGCAAAAAAGTCTGTGGGGATGCGTACCATGTGCGCAGGGTGAAGATTGATGCCTATTTGTGTACCACCAATGGGACAGCCCCAGAATTCTCAGGGTATCTTTTTGGAGGGCTTTATGGACCCTCCTTGCAGAACCCACTCACAAAATCAAAGGGCTGTCCCCCAGCCTACATTGCTCTCTCTCTACTGGGTGATGGACTGAAGATCTGCCTCAGTGATGACTATGAAATGGGTACCCGCTTCTCAGTACCTTTTGGAGGGTTATTCAGCTGTGAGTCAGGCAATCCTCTGGCGGGAGGGCTCTCAAAATGCCCATCTGGATTCAGTCAGCACTTAGCAGGGGTCAGTGATGGGTGTCAAATGCTTTATTGTGTGCGATCAGGGATTTTCACTGGTGGGGAGCTCCTGCCCATCCGTCTACCCCCCTTCACTCGTTCACCACTTATCAGTCTCAGTGCCACTAACACAGTTGCGGTGATGACTGAGGGGGAAATGTCCTGGATCAAGGATAGCAAAACCAAGATGTGGAAGATTGCCAAACCAGAGGAGTTGCAGAAGATGGCAGAGGTCTTTGAGGCTTCTTCTCATGGGGCCATGTCAGGTGGTGCAAAGTTTGGTGTGGCCCTGGGGGTCACCCTGGCGGTAGCTCTGGTAGTTGGCTTGATTGCACACATGATAAGGAGGAAGTGGAGGAGGGGTAGTGGGTATGATGAGATTCAGAGCGAGGAGGTTCAGGAAGAGCCAGTACCAGACAGAACAGCGGAGACAGAAATGGAGGGAGGTTCATCTCAAGCACTGCTGGCTTAAGAGTCGCAATGGACAAGGGTTCCCAGCCACatcacaaaatattaatttgtgtgtttgggTCAGCTTCAATTTGCTATAGGcatttaatggaaataatatgCACATTATATACTATGaacaattaattacaattgCACAAGCTTAGGGACAATAGTTAAATTTCTTGTAAATTGTTTGGATTTGGAATATATCACAATTTGTggtttcaaaatattaattctGGGCTGTGAAAAAGATAGGTATGGTCAGGTGACCAATGATGTTAAAAATGCAGCAAAGTCAGTATTAATGTCCATAAACACCAGGGTTTATTGAAATGGTGAATGAACTGGCCACCAAGAAGCTGTCAGCCTACAAACTTCCATAAATTGTCAATGGTAATGAAATTggtgtttaaataaaagttatagAAGATGTGCATTCCTTAGTAATCAGTTGATACAACAGGATATAATTAGTGGTTTTACGGGTTTTACATGATTTAACCCAATTTCTACACCCTGAATATTTTCAGGTTAATCCCCAAAACTCCAAGAATCTTTGAAAGCTGTCAGTTAATACACGTTATGAACACATTGACGATTCAAATGCAGGAGGAGACATGTAGCCGATTTAACCCGATGTATACATCCTGAATGGTTATTTTGGCATTGCAGTTAAACCTGAAAATTGCGGTCTGCTTCAAATTCCAGGGAAGAATATGACAATGCTGATGGTAAACTGAATAACCagtttaccaaaataaaaaaatataaaaaattgaagatttaatgattaatgaagGAATTCCAATTaagaaaatgtctgtaaataGTGATCTATAACCAAGTGTAGCTTTTTCAAATATAAGTAAGTTACTGGCATACATAATGTTGTGACAGTTGGAACATCACAAGGTTAATGTAATGCTATGAGAATATCTGTGATTTTATGTTACTATGTTAAAGTTTGACATGATGAATGGTaagatgtattttacattactaaTATTATATTCACCTGCACAACTACATAGCTGCAAATAAAATTGAACTAacaactgattttgttttgaatattttttcagtgtgtgtgttcattcaTAAGACAATACGTTAACTCAACAAAATAAgatttatataatacagtaataaaacagTAATCATACAagcaaaagaaatacaaacatttaacattaaaataccatgccaaaaaaataaaagcaataccaGTGCATTAACACTAGTACAGGTAAGAGTGTTGTAGGTTTTCAGTTACAGAAACAATTGCCATGAAGCTTTGTTACAacttattatacttattatatGTGTGCCCTTACAAACTAAATCTGATTGTTGATATtagaaattaatgtaaaacacaatgaaCATGTGGA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123090 lncRNA downstream 414590 12523793 ~ 12524075 (-) True G98671
TU123081 lncRNA downstream 468225 12470098 ~ 12470440 (-) True G98662
TU123069 lncRNA downstream 480592 12457626 ~ 12458073 (-) True G98658
TU123068 lncRNA downstream 482459 12455930 ~ 12456206 (-) True G98657
TU123067 lncRNA downstream 483810 12454625 ~ 12454855 (-) True G98656
TU123294 lncRNA upstream 304095 13248836 ~ 13249283 (-) True G98836
TU123309 lncRNA upstream 316270 13261011 ~ 13262227 (-) True G98844
TU123476 lncRNA upstream 385151 13329892 ~ 13335929 (-) True G98953
TU123470 lncRNA upstream 451906 13396647 ~ 13416500 (-) True G98950
TU123501 lncRNA upstream 520117 13464858 ~ 13519520 (-) True G98973
AMCG00015569 mRNA downstream 157694 12780747 ~ 12780971 (-) True AMCG00015569
AMCG00015570 mRNA downstream 158172 12779938 ~ 12780493 (-) True AMCG00015570
AMCG00015568 mRNA downstream 158751 12763912 ~ 12779914 (-) True AMCG00015568
AMCG00015561 mRNA downstream 297997 12623258 ~ 12640668 (-) True AMCG00015561
AMCG00015562 mRNA downstream 364613 12573463 ~ 12574052 (-) True AMCG00015562
AMCG00015575 mRNA upstream 23139 12967880 ~ 12982396 (-) True AMCG00015575
AMCG00015577 mRNA upstream 87300 13032041 ~ 13036515 (-) True AMCG00015577
AMCG00015578 mRNA upstream 94807 13039548 ~ 13055038 (-) True AMCG00015578
AMCG00015579 mRNA upstream 127766 13072507 ~ 13077755 (-) True AMCG00015579
AMCG00015582 mRNA upstream 153897 13098638 ~ 13108454 (-) True AMCG00015582
TU122943 other downstream 1522003 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 1552466 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 1677497 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 1677497 11257278 ~ 11261168 (-) False AMCG00015535
TU122884 other downstream 1700815 11023169 ~ 11237850 (-) False AMCG00015532
TU123499 other upstream 513386 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 726574 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 896488 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 896488 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 896488 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile