RNA id: AMCG00015579


Basic Information

Item Value
RNA id AMCG00015579
length 1172
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00015579
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13072507 ~ 13077755 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATGCAAGCGGAAGCAGGACCCGGAGACACAGCCGacttccttgttttgttttctttatgtgaTATCTCTCGTCTCCAATCGTTTtcgttttttaataaagcaatgcCAAAATTAAGGTGATTTGATGCAGTCATttaatgcattgtgtttttgttacgTTTGTAATGGTTGACATGCGCCCGGGCCCGTCCTGAGAGGATCCGTAACTGGATGCAAAGACGCTTTAAATCTCAGTTTCCTTGTTTCACATCGAAATCAAGCCGCGTAACTGCTGTCTATTCTGCACTGCCGTTGACATAAACTGATGTGACTACCCAGGCAACAGTGAAACCTACAACTAGCACACTTGGTGGGACCCACATCTCTGAAGCTGACGGCAGTATGTCGGATTCTGTGGCCTCTTTCCAATCACAGCTCTCCTCCATCCTGGAGATCCTCGTCAGAGCGGCAGTGTGCGAGGCGACCAAGCTGTTCGAGGGCAGTTGTGCCAATTTGCAGGTGGAAATCGCCCAGAGCAAGAAAGAAATCGAAAGCCTGAAGCTGAGGTTGCAGCTGTCAGAGAGCGAGCTGAGAGCAGAGCGGGACTATGGGGTAAGCATTGTGGGGAAGACGGCGCTTGCTTTAAACAGCCGCTGTGTTGGAGTGCAGGCTTCTGCTGAGATGGTACAGATAAAACGAAGAGGAACAGGAGATGGAGCCAAGGACAAAAGTGTGTCAATCATAGAGCAAGTCTTTGACAAGGACTGGTGCAGCAGTCTATGGAGAGCAGAGGACCCGACTTCTATTGACATAGTAGAGGAAGAGACCGAACATTATGCCGTTGGCTTCGCAGAGGATGATGCTGAGATGGAAACAGTCGTCATTAAAGAAGAGTCTACAGACACAGAGGAGGACAGCCCAGCATCACTACTTACTGTAAAGGAGAGAGCTGAAGAGAAGTTGGCCAGCAGAGAACTACAGGGAAGACTAGCTAGCCTGAGGAAGGAGGAAGTGGCAGCAGTGGCACAGTCCTTGTGCTTAAAGGAGGACGGGGCTGAGTTCGCTGAGGTTGCTCCCGGACAATATGGGATGGAAACGGACAATGGGCAACAGCCAAGACCCAGTGGAGCAGAAAGCTTAGAATTTCAGGATCCCACCAGTGCCATGGAACCCGAGCCCACCAACGAGGAG

Function

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123090 lncRNA downstream 548432 12523793 ~ 12524075 (-) True G98671
TU123081 lncRNA downstream 602067 12470098 ~ 12470440 (-) True G98662
TU123069 lncRNA downstream 614434 12457626 ~ 12458073 (-) True G98658
TU123068 lncRNA downstream 616301 12455930 ~ 12456206 (-) True G98657
TU123067 lncRNA downstream 617652 12454625 ~ 12454855 (-) True G98656
TU123294 lncRNA upstream 171081 13248836 ~ 13249283 (-) True G98836
TU123309 lncRNA upstream 183256 13261011 ~ 13262227 (-) True G98844
TU123476 lncRNA upstream 252137 13329892 ~ 13335929 (-) True G98953
TU123470 lncRNA upstream 318892 13396647 ~ 13416500 (-) True G98950
TU123501 lncRNA upstream 387103 13464858 ~ 13519520 (-) True G98973
AMCG00015578 mRNA downstream 17469 13039548 ~ 13055038 (-) True AMCG00015578
AMCG00015577 mRNA downstream 35992 13032041 ~ 13036515 (-) True AMCG00015577
AMCG00015575 mRNA downstream 90111 12967880 ~ 12982396 (-) True AMCG00015575
AMCG00015574 mRNA downstream 127766 12938665 ~ 12944741 (-) True AMCG00015574
AMCG00015569 mRNA downstream 291536 12780747 ~ 12780971 (-) True AMCG00015569
AMCG00015582 mRNA upstream 20883 13098638 ~ 13108454 (-) True AMCG00015582
AMCG00015586 mRNA upstream 104083 13181838 ~ 13193481 (-) True AMCG00015586
AMCG00015589 mRNA upstream 207715 13285470 ~ 13311221 (-) True AMCG00015589
AMCG00015594 mRNA upstream 283669 13361424 ~ 13364977 (-) True AMCG00015594
AMCG00015596 mRNA upstream 291648 13369403 ~ 13409708 (-) True AMCG00015596
TU122943 other downstream 1655845 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 1686308 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 1811339 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 1811339 11257278 ~ 11261168 (-) False AMCG00015535
TU122884 other downstream 1834657 11023169 ~ 11237850 (-) False AMCG00015532
TU123499 other upstream 380372 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 593560 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 763474 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 763474 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 763474 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile