RNA id: AMCG00015589


Basic Information

Item Value
RNA id AMCG00015589
length 2204
RNA type mRNA
GC content 0.45
exon number 12
gene id AMCG00015589
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13285470 ~ 13311221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTAAGAAATCAAATGAGGATACTCTCTCCGTTCTGAAGAAACACAGGAAGAATGAGCTGGCCCAACGCAAGAAGGAGTACAAGAAGGTGGAGATGTGTTTTGAAGGTCATGACCTGATTAGGGAATCCTGGGAGATCCTGGAGAAGCTAATGAAAGCTGTGCATATAAAACAACTTGCAGATGACTATCCCTGGTTGATCCCCCATCACTCCAACAACTGTTTTGTAGAGTATGTGAAAAAGCACTGGCAAGAAGATGCGTTCTTTGGGTATCAGTATCTGAATGGTACCAACACCACTCTGATCCGGAGATGTGATGCCATTCCGGCCAACTTTCCCGTCACCAGCAAAATGGTCTCCCCATTCCTGGACAAGAGCCTGGAAGTGGAATTAAAGGCAGGAAATCTCTTCCTAGTGGACTATAAACTTCTAGACGGAATCAAAGGCAATGTGTTGAAAAAGATTCAGCAATATGTTCCTGCCCCTCTGTGTCTGCTGTACAAGAAGGCAGATGGAAACTTGGTCCCTATTGCTATACAGTTGAAACAGAAGCCCGGCTCGGAAAACCCAATATTTCTGCCCAATGACTCTGTGGACAACTGGCTCTTGGCAAAAGTGCTGGTGCGCAGTGCGGATTTCAACTATTTCGAGTGGATTACTCACCTCCTGCGCACTCACTTGATGGCTGAAGTGTTCTGTCTGGCCACCATGAGACAACTGCCCTCAGTGCACCCTCTGTTTAAGCTCCTGATTCCTCATACACGCTACACACTGCAGATCAACACTATGGCCAGAACCTTTCTGATCAACAAAGGTGGCATTTTTGACAGGGCCTTCAGCACTGGGGGTCCGGCCAAGAAAACTGTGTTGCAGAGGGGCTTCGAGTCCCTGACCTACAGCGCCTTCTGTGTCCCTGACGACATCAAAGTCCGTGGTGTTGAGAATGTGCCCAACTACTACTACAGAGACGATGCTCAGGAGCTGTGGGCAATCATCAATGAGTTTGTGGTGAAGCTGGTCAGTTATTACTACAAGAGCAACACAGATGTGAAGAAGGACTCAGAACTACAAGCTTGGGTGCAGGACATCTTTCAAGCTCTTCTGAGCCGCAAGTCATTAGGCAACATTGAAGAGCTGACCAAGTTTCTGACCATGGTCATTTTCACCTGCTCTGCACAGCACAATGCTGGCAATGCTGGACAGTATGACTTTTCTGTCTGCTTGCCCAACGCCTCGTCGACCCTGCGTCGCCCTCCCCCCACCTCCAAGACCAGCCGTGTGGACTATAGAGGCTGGATCGCTGATGCCCAAAGTGCTGTTAACTCCAGAGCTACCACCTGGGTCCTCACCCGCCCCTCTCATGATCCCGTTTTCTTGGGCCAGTATCCTGAAGAACGCTTCACCGAGGATATCCCGAAGAAGCTGATTAAGGAGTTCCAGTCAGAGATGCAGAAGTGCGATGAGCGAATTAAAAAACGCAATGAAAAACTGGACCTGCCATACACCTACCTGCTGCCAAGTGCCACGGAGAACAGTGTGTCCCTTTGAGGAGCTGCTCAGCATTGTGGGTGCAACACACTTTACATGCAGTGctaaatcatgtttaaaaaaaaaaaaaattagaaatgTGCAAATAACCCTGTGAGGTTTAAGTGCTTAACTGGAATAATAATTTGGCTAATCTGAGTTTTTGAATTATTGTAAGCagtaataagaaatataaaatgataaaaggCACTTGAAGTTTCAAACATATTGTAAGCTAAATGATTTAGGAagtcaaattaagcaaaatattagttcagttaaggtTTAAATTATGTACCCAAGAGCACGGCTGGAACAGAAACCAACAGGACAGTAGGGCAcaagaccagggttgggaacgaatgaaaatgaaagtgttcATATTAACCTAACAATATCATATTAAATAACTTTGCTTACTTGTCTGGATTCCCAAATGATTGTTTTGTACAGTATGGAGGGGGGAGTGGAGGGTGGCAATTGTAACCGAGTTATACATCTAAAAATACACCTGTCACTTTGGAGGCTTGAAAGCAAAATTTCTCTGTGGTTTTGTCTCTTGATTTCCTTGCTGTCCCTGGCTTTTACTCTCCTTCCCCTTTGTTCTCAGTCACCCCTTTAATTTCTCTATTTCCATTAACATCTTTGAATTTCATGCAGTTCAACTCACCTCTCCA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00454 LOX2S; lipoxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123309 lncRNA downstream 23243 13261011 ~ 13262227 (-) True G98844
TU123294 lncRNA downstream 36187 13248836 ~ 13249283 (-) True G98836
TU123090 lncRNA downstream 761395 12523793 ~ 12524075 (-) True G98671
TU123081 lncRNA downstream 815030 12470098 ~ 12470440 (-) True G98662
TU123069 lncRNA downstream 827397 12457626 ~ 12458073 (-) True G98658
TU123476 lncRNA upstream 18671 13329892 ~ 13335929 (-) True G98953
TU123470 lncRNA upstream 85426 13396647 ~ 13416500 (-) True G98950
TU123501 lncRNA upstream 153637 13464858 ~ 13519520 (-) True G98973
TU123527 lncRNA upstream 227306 13538527 ~ 13540957 (-) True G98993
TU123526 lncRNA upstream 228397 13539618 ~ 13539998 (-) True G98992
AMCG00015586 mRNA downstream 91989 13181838 ~ 13193481 (-) True AMCG00015586
AMCG00015582 mRNA downstream 177016 13098638 ~ 13108454 (-) True AMCG00015582
AMCG00015579 mRNA downstream 207715 13072507 ~ 13077755 (-) True AMCG00015579
AMCG00015578 mRNA downstream 230432 13039548 ~ 13055038 (-) True AMCG00015578
AMCG00015577 mRNA downstream 248955 13032041 ~ 13036515 (-) True AMCG00015577
AMCG00015594 mRNA upstream 50203 13361424 ~ 13364977 (-) True AMCG00015594
AMCG00015596 mRNA upstream 58182 13369403 ~ 13409708 (-) True AMCG00015596
AMCG00015593 mRNA upstream 113248 13424469 ~ 13424876 (-) True AMCG00015593
AMCG00015595 mRNA upstream 115635 13426856 ~ 13432356 (-) True AMCG00015595
AMCG00015592 mRNA upstream 131370 13442591 ~ 13453776 (-) True AMCG00015592
TU122943 other downstream 1868808 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 1899271 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 2024302 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 2024302 11257278 ~ 11261168 (-) False AMCG00015535
TU122884 other downstream 2047620 11023169 ~ 11237850 (-) False AMCG00015532
TU123499 other upstream 146906 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 360094 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 530008 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 530008 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 530008 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile