RNA id: AMCG00015598


Basic Information

Item Value
RNA id AMCG00015598
length 3615
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00015598
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13458127 ~ 13468822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCCCAGGGCCATAACGGAAGGTCTCCGCTACCACCGCCAGTCTTGCCTCCCAcctggcagagagagggaggagaaggagtTCAGGAATATGGGATGGCAGCCCCTCACACTCACCTTCCAACATGGCTCTCGCCTCCACTACTACTGCCCCCTCCTTCTTTCCACCCCCTCCACATCCCACCATCCCTGGGGCAAGGAGCAGGAGGAGAGtgagaaggagggggagggggaaagggatgctgtgtctgtgttggcTCCTGGGTTCTCTCACATGTCTGGTTTCAAGGAGGCCAAGCAGAGCCTGCACCTGCATCCCCCTCGAGACCCTGCCATGCCCCACACCAGCCCAGGCACTGCAGGGACTTCAACTCCCATCATGCATCCTTCTGCAGACACTTTAAAGACTATAGGCCCAATCATTAACCTATCTGCAGACACTAGGCAGCCTACAGCTGTCACTTGTCCTTGGTGGCCTACAGCTTCCCTCTTGCCTCCTAGGACAACTTTTGAGGACACTAcaattcccagcatgcacttcTCTGCCTGTGACCGCCTGGAGAACACACATCCCAGCTACTCTGTATCTCCAGGGGGGGTCCTTCTCAGCCCTCCCTCCCCACAGCTTACTCCTGTGGCAGGGGCCCTGGAAATGACAAATCCCAGCATGCACTACTGTTCAGGAAGTGCCCAGGCAGAGACTACAGCCCCCAGGGGCGACTCCCTGAATGACCTCAAGGATGTACTGGAGCACTTCCTGAGAACTGtggaggaggaagggagaggtGGAGGAGAGGGTGGAAGCAGacaagggagggagggggagagaggagttCCATTTTCAacgagagaagaggagaaaggagagaaggaggggagcAAAGGGTGCAGGAGCGGGACTCATCACAGACACAGGTCCAGAGAGAGTCCAAGAGACAGGCCTGAAAAGACTGAGGACAGACCAAGCCACCAGACCCCATCAATCAACCCATACAGAGAGTCACCTCCGCATTCCCCCTCCCCAGCCTTACCCTTGGCTGAGCTTAGCCTTCCACAGGAACTCCATCTCCCAGCGCCCAGAGAGGAGACGAACAGCAAGAGCGAAAAAGatgaagagagggagggaaagacagacagagagatggagatgggGAGAGATGTCCACAAGGAaggaagagagagcgagagggtgAGCGAATCTACACACCTCCCACcaaagaatgagagagaggattgtgggaggaagaaaaagaggAGGAAAATAGTGAAGATCTGCATACCAAGAAAACGCAAgagggagatgagagagagggctggtgggggtggggagaagaggagagagggaatggAAGTGGAAGTGGGGAGGAGGGGCCCCGAAGGACtcaagaggaagagagaggcaTCTgtggaaaggagagagagagtgcagaagagagaggagacggagagagagagggaagaggagagtGCAGGAGAGAAGATGAGAGAGAGCCAGGAGACCAGCAACAATGAGAGAAACCGAGAGGGCGCACTGGATCAAAGCCAAttgggagaggggagagaggagcagGACATGATGAGCACATCTCTTCATGGTGTAAGGAagtgtgggagagggagagaggacacACCTAAACAATGGGAAATACTAGCTAACCATCCCCTTGACCGTGAGACTGGGACTGTGGAGGTGAGGCCGAGTCCTTACCCTGGGACTGAGGAGCTGATTGGCCAGAGAATAGTAGCAGTAAAAGGTGGCAGTTGTCTGTCCACACCTCCCTGGCTTTCAAGGCCTCAGAGTGGGCAGGggggacaggagagagaggagggtcTGGTGtgcaggaggaggagcagaaTGGAGAGGGAGAATGGGGCAACTTTGGCTCAGAGTCCCCAGCCCAGGAGGGGGAAAGAGGCAAGGGTTAGGAGTTGGAGAGGGTCAGTGTGTGCCTGTGAGGAGGGAGAAGTGAGGAGGGCAAGGGAGGTGGGGTCTGCTGTGACCAGGACCCCCAGTAAGGGTACGGGCTGCATCCCCATAGCGAAGAGGGGAAGACTGGGGGCCAGGCCAGTGAGGGAAGGGAGCTGCAGGTGGGGGTGGAGGAGCAGGGACCAGAAAAAAGATGTGccgagaaagaaagaagggagaACAGAGGCAAGGGAGAGGAGACAGAGGATGGGAGGAGTGTTGCGTCGAGCAGGGTTCCCCAACATTACACCAGTGTGCCCCAGTGAAGGAAAGAGGGTTATGGGAGCCCGGGGGAGAGGAGGCACAACAGGAGAGGAGGTGAAGAAGATTGACAGAGAGGAcctgaaagagagaggaagaggaaaaggagggagaagaggaggagagacagacagaccagaAACTGCAtcagaacacagagagagaggaggaggtagagaggaaggaggaggagagctaGATAGACTGGACATTGTCCCAGACCTCAAAGAGAAAGCGAGAGGAGAAAGAGTGAGGGGAGGAGAGCCAGACAGACAGGACAATGCCCCAGACcacaaagagagaggaggaggaagagaggaaggaggaagaggaggagagccAGGCAGACAGGAAACTGATGCAGacctcagagagagaggaggaagaagatgGAAAGAAGGGcaaggaggagaaagaggagaagaGCCAGACAGCCTGGATGCTCCCCCAGACCTAAAacagagaggaggaagaggggaagAGCAAGATAGGCTAGACACTGCCCCCAACCTCAGAGAGAAAagtggaggaagaggggaaggaggaggaagaggagaagagcCAGACAGCTTGGATATTACCACACAACCCAAAGAcagggaggtggagagagaaagggaaaggaaGGGGGAGGTTAGTCCTGTGGGAGATGTAGGAGCTTCATTAGCCATCAGCTCCAGAGACAGCCCAGAGACGAAAAGAAGGGCAAGACCTTGCAAGAAGGGCTGGAGCAGCCAGGAGCAGACGAGGAAGAAGGGAGATCCTGCCTCCTTGCTGGTCTGGCCACTGAAAGAAGCCACCCGGCATCATCTGACCTCGCGGGACTCCCCTCCGCTACACCGCCAGAACACCAAGGAGTCAAAAGGAAGTGTGAacggagaggaggaggaggaggaggaggaggaggaggaggaagttGATGTTCTGGAGTGCTCCAGCCCCACCCCATCTCCACCATGTCATTTCCTGTTGGCAACCCTGAGGGCAGGGCTTACTTGCGGGGACCAATCGGAAGAGGACGCAGAGGAGCAGGAGCTGGAGATCGATtcagtcagtgaggcAGTCGGAGCTCCGGGTTGCTTGCGGAGAGGAGACCGGGGACTGGGAGCGATGGACCCGCTAAAGGCGCAGCAGTTAGCCGCTGAATTGGAGGTGGAGATGATGGCGGATATGTATAACCGGAAGTGTGTGCCTCCCCATTACCGTGAGGCAGAGCTGTCCAAGGGTGAGGCAGTCTGCCTGGACCGCTGTGTGGCAAAGTACCTGGACGTCCATGAGAGACTGGGCCGCCGACTCACTGAGCTCTCGATGCAGGACGAGGAGCTCATGAAGAGGGTGCAGCAGGGGGGACCCGCTgcctctcccactcccactgCAGGACACTGA

Function

GO:

id name namespace
GO:0045039 protein insertion into mitochondrial inner membrane biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123470 lncRNA downstream 42054 13396647 ~ 13416500 (-) True G98950
TU123476 lncRNA downstream 122625 13329892 ~ 13335929 (-) True G98953
TU123309 lncRNA downstream 196327 13261011 ~ 13262227 (-) True G98844
TU123294 lncRNA downstream 209271 13248836 ~ 13249283 (-) True G98836
TU123090 lncRNA downstream 934479 12523793 ~ 12524075 (-) True G98671
TU123527 lncRNA upstream 69705 13538527 ~ 13540957 (-) True G98993
TU123526 lncRNA upstream 70796 13539618 ~ 13539998 (-) True G98992
TU123574 lncRNA upstream 110903 13579725 ~ 13597723 (-) True G99002
TU123577 lncRNA upstream 110903 13579725 ~ 13816527 (-) False G99002
TU123537 lncRNA upstream 259854 13728676 ~ 13734758 (-) False AMCG00015606
AMCG00015592 mRNA downstream 4778 13442591 ~ 13453776 (-) True AMCG00015592
AMCG00015595 mRNA downstream 26198 13426856 ~ 13432356 (-) True AMCG00015595
AMCG00015593 mRNA downstream 33678 13424469 ~ 13424876 (-) True AMCG00015593
AMCG00015596 mRNA downstream 48846 13369403 ~ 13409708 (-) True AMCG00015596
AMCG00015594 mRNA downstream 93577 13361424 ~ 13364977 (-) True AMCG00015594
AMCG00015599 mRNA upstream 51842 13520664 ~ 13521014 (-) True AMCG00015599
AMCG00015603 mRNA upstream 137553 13606375 ~ 13624705 (-) True AMCG00015603
AMCG00015601 mRNA upstream 194835 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015606 mRNA upstream 253252 13722074 ~ 13738786 (-) False AMCG00015606
AMCG00015605 mRNA upstream 272075 13740897 ~ 13742235 (-) True AMCG00015605
TU122943 other downstream 2041892 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2072355 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 2197386 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 2197386 11257278 ~ 11261168 (-) False AMCG00015535
TU122884 other downstream 2220704 11023169 ~ 11237850 (-) False AMCG00015532
TU123543 other upstream 202493 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 372407 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 372407 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 372407 13841229 ~ 13864738 (-) False AMCG00015612
TU123831 other upstream 857345 14326167 ~ 14334932 (-) False AMCG00015628

Expression Profile