RNA id: AMCG00015599


Basic Information

Item Value
RNA id AMCG00015599
length 189
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00015599
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13520664 ~ 13521014 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTACATGCCCACTGAGATGGAGCTGATCGAGCTCAGCCAGCAGATCTgtggagGAAGGGTGGACTTTGAAGACTTTGTGGAACTGATGGGTCCCAAGATGCTGGCAGAGACAGCAGACATGATCGGAGTGAAGGAGCTGAGAGACGCCTTCCGAGAGGTCTGCTCAGTAACTACTAATCAATAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123501 lncRNA downstream 1144 13464858 ~ 13519520 (-) True G98973
TU123470 lncRNA downstream 104164 13396647 ~ 13416500 (-) True G98950
TU123476 lncRNA downstream 184735 13329892 ~ 13335929 (-) True G98953
TU123309 lncRNA downstream 258437 13261011 ~ 13262227 (-) True G98844
TU123294 lncRNA downstream 271381 13248836 ~ 13249283 (-) True G98836
TU123527 lncRNA upstream 17513 13538527 ~ 13540957 (-) True G98993
TU123526 lncRNA upstream 18604 13539618 ~ 13539998 (-) True G98992
TU123574 lncRNA upstream 58711 13579725 ~ 13597723 (-) True G99002
TU123577 lncRNA upstream 58711 13579725 ~ 13816527 (-) False G99002
TU123537 lncRNA upstream 207662 13728676 ~ 13734758 (-) False AMCG00015606
AMCG00015598 mRNA downstream 51842 13458554 ~ 13468822 (-) True AMCG00015598
AMCG00015592 mRNA downstream 66888 13442591 ~ 13453776 (-) True AMCG00015592
AMCG00015595 mRNA downstream 88308 13426856 ~ 13432356 (-) True AMCG00015595
AMCG00015593 mRNA downstream 95788 13424469 ~ 13424876 (-) True AMCG00015593
AMCG00015596 mRNA downstream 110956 13369403 ~ 13409708 (-) True AMCG00015596
AMCG00015603 mRNA upstream 85361 13606375 ~ 13624705 (-) True AMCG00015603
AMCG00015601 mRNA upstream 142643 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015606 mRNA upstream 201060 13722074 ~ 13738786 (-) False AMCG00015606
AMCG00015605 mRNA upstream 219883 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015604 mRNA upstream 233054 13754068 ~ 13760730 (-) True AMCG00015604
TU123499 other downstream 60875 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2104002 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2134465 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 2259496 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 2259496 11257278 ~ 11261168 (-) False AMCG00015535
TU123543 other upstream 150301 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 320215 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 320215 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 320215 13841229 ~ 13864738 (-) False AMCG00015612
TU123831 other upstream 805153 14326167 ~ 14334932 (-) False AMCG00015628

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_05431517_05435978.mRNA True 666 mRNA 0.44 5 CI01000000 5431517 ~ 5435978 (-)