RNA id: AMCG00015603


Basic Information

Item Value
RNA id AMCG00015603
length 696
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00015603
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13606375 ~ 13624705 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGACAGCCGGCCAATTGAAGAATCCGGCTGTGATGCAATCTCAAGCTGTAATTGAAGATTATGAGAACTCAGGTTTCGACAAAGGCCACCTGGTCCCCGTCTGTCACCGGAGCAGCAAGGACAGCAAAATCAGCACCTTCACTCTGACCAACGCCGTTCCACAGAACCCCAGCTTTAACAGAGGGAAGTGGAGAGTGCAGGAGACAGAGCTGAAAGCTTACATTATGAAAAACTGTCAGAAGGATCAGAATAATAAGCCTCTGGCCAAACTCATTACAGGTTATCACTACCAATTATGCAGGCGGCCCTGTGGAAATAAACTCTTCATGTATCTGAAGAAGTTGCTGATCGTCTCCTACTATGGTGATATTGACAACGACCCTTGCCTGTCTCCAAATGCTCTCGAGGAACGCATGGCGAAAATATCGGCTGGGGATCTGGGCACTGGAGGGAATCCACACTCGTGCGAAAGAGGAGCATTGGGAGAGTCACATGACAGAGCAGCCCCACCCGTCCTTGCGAGAGATGGTGGTGGCCCAACGCAGCCAGCTCAGCCGCGGGGGGGTGTAGGGGGGGTAGCGCAGCACATTGACCCGCTCCAGGCCCCACCCCCGCAGCATCACCGCCCGGCTGTGCGAGAATGTGTCGAAGCCCCAGCGCCCATGGTACCGGCCCATCCCACTagcacctga

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123574 lncRNA downstream 8652 13579725 ~ 13597723 (-) True G99002
TU123527 lncRNA downstream 65418 13538527 ~ 13540957 (-) True G98993
TU123526 lncRNA downstream 66377 13539618 ~ 13539998 (-) True G98992
TU123501 lncRNA downstream 86855 13464858 ~ 13519520 (-) True G98973
TU123470 lncRNA downstream 189875 13396647 ~ 13416500 (-) True G98950
TU123537 lncRNA upstream 103971 13728676 ~ 13734758 (-) False AMCG00015606
TU123546 lncRNA upstream 103971 13728676 ~ 13734758 (-) False AMCG00015606
TU123550 lncRNA upstream 103971 13728676 ~ 13734758 (-) False AMCG00015606
TU123572 lncRNA upstream 163202 13787907 ~ 13810895 (-) False AMCG00015606
TU123556 lncRNA upstream 166343 13791048 ~ 13845677 (-) False AMCG00015606
AMCG00015599 mRNA downstream 85361 13520664 ~ 13521014 (-) True AMCG00015599
AMCG00015598 mRNA downstream 137553 13458554 ~ 13468822 (-) True AMCG00015598
AMCG00015592 mRNA downstream 152599 13442591 ~ 13453776 (-) True AMCG00015592
AMCG00015595 mRNA downstream 174019 13426856 ~ 13432356 (-) True AMCG00015595
AMCG00015593 mRNA downstream 181499 13424469 ~ 13424876 (-) True AMCG00015593
AMCG00015601 mRNA upstream 38952 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015606 mRNA upstream 97369 13722074 ~ 13738786 (-) False AMCG00015606
AMCG00015605 mRNA upstream 116192 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015604 mRNA upstream 129363 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015613 mRNA upstream 202272 13826977 ~ 13829722 (-) True AMCG00015613
TU123499 other downstream 146586 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2189713 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2220176 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 2345207 11233315 ~ 11261168 (-) False AMCG00015535
TU123543 other upstream 46610 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 216524 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 216524 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 216524 13841229 ~ 13864738 (-) False AMCG00015612
TU123831 other upstream 701462 14326167 ~ 14334932 (-) False AMCG00015628

Expression Profile