RNA id: AMCG00015604


Basic Information

Item Value
RNA id AMCG00015604
length 2020
RNA type mRNA
GC content 0.52
exon number 20
gene id AMCG00015604
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13754068 ~ 13760730 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTAATGCCGACCGCCAGAGGCACTACCGAGCCGAGAtgTACATGAATGGAGGCTGTCAGCAGCACCTGTTGGATGCAGGAGGCCCTATGCGCAGGGCCAGGCTGAAGGAGGACAGCAGCAACCCTCTGAGGAGATTGCAGAATCACTGTGACCGTGACCGAGGAGGCAGTGGCAGCTGGTTCAAAATGACGGTCCTCTGTAGTGAGAAGTACGACAAGTCGTTGTTGCTGACCGCCCTGCGGGGCCTGTGCACCGTGCCCTTCATCCCAGTACAGTATCACTGCAAGGGTAATAGGGTGGTGTTCTACGTGGATGACGCCTGCACAGCCAACGCGCTGTGCAAAGTGTCCGGCAAAATCACTGCCACTGAGGGACACAAGGTGTACATCGTCATGAACCgcagccccccgccccccagcaTGCTGAACAGACTGAAGCCGCAGGACCTGGAGCAACTCAAGCAATGTATGAGTAAGCGTTTTGATGCCTCCCAGCAAGCTCTGGACCTCAGCAGCATTCGCACTGACGCAGACCTGGTGTCTCGGAATATTGAGGTGATTCTGAACAGGACGTGCGGCATGCAGGACATCAATGACATTATCGAGGAGAACATCCCTGAGCTCCTCTCTCTGAACCTCAGCAACAACAGACTCTACAAACTGGACGAAGTCTTGGAGTTGGTGAGAAAAGTGCCCAACCTGAAGATCCTCAACCTCTCCCACAACGAGCTGAAGTCAGAGAGGGATCTGGACAAGGTGAAGGGCTTCAAGCTGGAGGAGCTGTGGCTGCAGCACAACCCCCTGTGCGAAAACTACAAAGACCAGCCATCCTACATCAGCGCCATCAGAGAGAAGTTCCCCCGACTGCTCAGGCTGgaTGGTCATGTCCTCCCCAGACTGATTACATTTGAGATTGAACCCCCAACCACACTCCCGGCCTGGAAGggCAGTACTTCTGTGGGTAGGAAGGTGAAAAGAGTGATTCAGCGCTTCCTGCAGCATTCCAACATCAAAGAACTGAAAGACCCCACCTCGTGGTTCCACCTGCAGAAGCAAACACGCCAGGGTGTGGTGGCCCTGCTGAACGAGCTGCCCAAGACGCAGCACGACCCCAGCTCCTTTGTGGTGGATGTCCACACCAGCATTaaaAAGATGGTGTGCTTCACTGTGAGTGGGGTGTTTAAAGAAGtgAACGAGAAGTCTGGAGACTCAGTGCGCATGTTCTCTCGCACGTTCATCACTGTTCCTGCAACAGATTCTGGGCTCTGTATTGTGAACGATGAGCTGTTTGTGCGGAATGCAAAGACGGAGATGATCAGACGGGCGTTCACCACCTTGGCCCCCATGCCACCCAGCAGCTCCGTGCCCAAACTGACGGCAAAGCAGCAAAAGATGCTGTCCATCTTCTCCATGAGGTCCCGCATGAACCTGGAGTGGTCACAGAAGTGTCTACAGGACAATGCGTGGGATTTCAACAGAGCCTCCAAGATCTTCACCCAGCTCAAGgCTCAAAGGAAGATCCCAGATGTGGCTTTTATGTGAAGAAGGTGTGAGTGtgatgagagggagagagacagatgtgATATCTCTGCAGTGAAGATCCCCTTTATGAAGACCCTCCTTCTTActggacttttttttattgtaattctttttttaatcccttTTCCCTGCTTTGATACTCCCACAGCAGCCCCACTGCACCCCCAGCCCCTCCTAGGTTTCTTTGTGTGTATTACCCTCGGCAGTGTGTATTATGTTAAGTTGGCTGCACTAAACATAGCAGTGTCcccacataaaaataaataaataggacaCAGGAAGGAGCAGTACACAAAACGAATAACAAATCTGTGGGCCAGAACTGTAACCGAGAGGTACATGTTTCCATCCCGGTGGGGAAAGAAGGACAGTGGCAAAGTAAAAATGGCAGTGGAGGGCAGCAGGCTTTTCCACTACAATGACAAAGACAGATCGGTTTGTCTATTACAAACCTTCCATTACCAACTATGACACT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K14284 NXF, TAP, MEX67; nuclear RNA export factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123537 lncRNA downstream 19310 13728676 ~ 13734758 (-) False AMCG00015606
TU123546 lncRNA downstream 19310 13728676 ~ 13734758 (-) False AMCG00015606
TU123550 lncRNA downstream 19310 13728676 ~ 13734758 (-) False AMCG00015606
TU123574 lncRNA downstream 156345 13579725 ~ 13597723 (-) True G99002
TU123527 lncRNA downstream 213111 13538527 ~ 13540957 (-) True G98993
TU123572 lncRNA upstream 27177 13787907 ~ 13810895 (-) False AMCG00015606
TU123556 lncRNA upstream 30318 13791048 ~ 13845677 (-) False AMCG00015606
TU123614 lncRNA upstream 73787 13834517 ~ 13840231 (-) False AMCG00015612
TU123615 lncRNA upstream 73787 13834517 ~ 13840231 (-) False AMCG00015612
TU123616 lncRNA upstream 73787 13834517 ~ 13839676 (-) False AMCG00015612
AMCG00015605 mRNA downstream 11833 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015606 mRNA downstream 15282 13722074 ~ 13738786 (-) False AMCG00015606
AMCG00015601 mRNA downstream 88291 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015603 mRNA downstream 129363 13606375 ~ 13624705 (-) True AMCG00015603
AMCG00015599 mRNA downstream 233054 13520664 ~ 13521014 (-) True AMCG00015599
AMCG00015613 mRNA upstream 66247 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015612 mRNA upstream 77221 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015611 mRNA upstream 105121 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015614 mRNA upstream 296609 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015615 mRNA upstream 318764 14079494 ~ 14084022 (-) True AMCG00015615
TU123543 other downstream 14949 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 294279 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2337406 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2367869 11353783 ~ 11386199 (-) False G98543
TU122906 other downstream 2492900 11257278 ~ 11261168 (-) False AMCG00015535
TU123617 other upstream 80499 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 80499 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 80499 13841229 ~ 13864738 (-) False AMCG00015612
TU123831 other upstream 565437 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 686981 14447711 ~ 14456695 (-) True G99213

Expression Profile