RNA id: TU123543


Basic Information

Item Value
RNA id TU123543
length 1966
RNA type TUCP
GC content 0.50
exon number 3
gene id AMCG00015606
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13671315 ~ 13845677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTTACACAATCTTCCCAACCCCCTTCTCTTGTCAAGTGTCTGTGCAGAAACAGGGCTTCAGCACCTGCAGGTGCACACAGTGCAGCTTCCGTTACAACTGCAGTGAACCACAAggacagagggggaggggtggtaTACAGTTTACAGATACAGGcagcagagaggaggagaagagagagagaaattgtaatataatgAATGTAAGTATATATTAGAGGAAGCGAGAGACAGGGTTATTACAGTACATACAGCGAAAGAGTTAAACGTGGAGAAAACCCACTACTCTCTATAAAAGGCTACACTTGAGGAGGGTGGGGTGGAGAGGatgtgacagagagacagagagagagagagacagagagagagagagagagagagaggggtgcgTGGGGAGCAGCAGGTTGGATGAGAGACAGAAaggaagagacagagggagTTACAGAGGAAAGTCTAGCCGAAAGCCGTTTTATTTCCACTCGTTCTGTGAACCATCAATGGACTCGAATCAGAACCGACTGCTTCTGTGCGCCATCGTGGCGCTGGTCTCGGTCCAATGTAAGTATCTCGCCATTCATCCGGGACAGGACTGGACTCGAGGAAAGCAGACACaaggagaaagaaagcaaaattaaatgtgcTGGAATAAATCACAAACGTCTCAGCCTCAGTGGCCGATTACATATTACAACCGTTGTCTgtataaaagaagaagaattaaagtaactttatttattacaattaattgTAACATTATGATTATCTCCAGAAATTCCTTAAACTTGAAAGAGTAGTCTACATTAGCTGCATTTAATATTCGCATGTATCTTCGTGTGTAATATATACCACATATAGCACCAAGTAAAGGTTacaacttaaataaataaataataataataataataatacaattttctaTATAAAGCTGCGTAATTTTACTAATAGATGCAGTTAAACAAATACGCTGACTTTGATTGAGATCTGTCgttgaaaaaaacattgtatttcttaaatgaatacataaagcATCGCTAACACCCCATTGCCTGTTCAGTAACCGAAGCTCAGCAAGTCAGCGCCACCCAAACGCCAACCGCCCCGCAGCTCGTCCGGGTCAATGGCACCCTGAGCCTGCAGTGCCGCACCGGTTCCGACAGCTACAGTCTGATGTGGTACCGCAACCGGCGAGCCAGCGGCGGCGTGTCGGCGGGGCTGGAGCCGCTGTCGTTTTCATACGCTTCCAGCTCTGAGGCCGATGTGTCCGACGCCCCGAAGGACGTGGAGGGGCGGGTCGAGTCCAAGCGAAGCGGGTCCGAGCTGAGCCTGCATCTGAGCGACGTGAGGCCGGGAGACAGTGGGTTGTACTACTGCGCTGCCAGAGACGCACAGAGGCGCGTCGGAACCGCCCGTCTGTGCAGGAACAGCGACACATGCTGATGCTCTTCACAGGCCAGAGAGAAAACTAGTGTAAAAGTGCGCTTTACATATCTGATTACATAGCAGAGTACGTTTTTATAGACACACATGTACAGGGACATACGCGGTCCTCTGTCAAATCCTTCTTTAAACGTCTCTCTCCCTTCAGTCTCTCTTTCCCAGACGCAGGTCGAGGTCACCCAGTCGCCGGCTCTGACTGCTCTGACAAACGGCAACATCAATCTGACTTGCGAAGTTAACCAGGATAACTATAATTTCTTCTGGTACCGCCAAGAACCGGGCCGGACCGAGCTGGTACCTCTGGGGGCGCTGTACAGCTATGATACCGACAAGGGCAGCGAGAAGGCTGACCGCACTGAGCTTGCGCAGCGGTTCGGCTTGAGTCGGCTGACAAAGCGGTCGGTCGCGCTGAAGGGGACGGGGCTGCAGGGGACCGACACCGCGCTGTACCTGTGCGCATCCAGAGACACACTGCGGCCGGGGAGACGGGCAGAGCTGTACAGAAGAGAGAGANagagagggagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123574 lncRNA downstream 73592 13579725 ~ 13597723 (-) True G99002
TU123527 lncRNA downstream 130358 13538527 ~ 13540957 (-) True G98993
TU123526 lncRNA downstream 131317 13539618 ~ 13539998 (-) True G98992
TU123501 lncRNA downstream 151795 13464858 ~ 13519520 (-) True G98973
TU123470 lncRNA downstream 254815 13396647 ~ 13416500 (-) True G98950
TU123572 lncRNA upstream 48788 13787907 ~ 13810895 (-) False AMCG00015606
TU123556 lncRNA upstream 51929 13791048 ~ 13845677 (-) False AMCG00015606
TU123614 lncRNA upstream 95398 13834517 ~ 13840231 (-) False AMCG00015612
TU123615 lncRNA upstream 95398 13834517 ~ 13840231 (-) False AMCG00015612
TU123616 lncRNA upstream 95398 13834517 ~ 13839676 (-) False AMCG00015612
AMCG00015601 mRNA downstream 5538 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015603 mRNA downstream 46610 13606375 ~ 13624705 (-) True AMCG00015603
AMCG00015599 mRNA downstream 150301 13520664 ~ 13521014 (-) True AMCG00015599
AMCG00015598 mRNA downstream 202493 13458554 ~ 13468822 (-) True AMCG00015598
AMCG00015592 mRNA downstream 217539 13442591 ~ 13453776 (-) True AMCG00015592
AMCG00015605 mRNA upstream 1778 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015604 mRNA upstream 14949 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015613 mRNA upstream 87858 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015612 mRNA upstream 98832 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015611 mRNA upstream 126732 13865851 ~ 13869990 (-) True AMCG00015611
TU123499 other downstream 211526 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2254653 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2285116 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 2410147 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 2410147 11257278 ~ 11261168 (-) False AMCG00015535
TU123617 other upstream 102110 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 102110 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 102110 13841229 ~ 13864738 (-) False AMCG00015612
TU123831 other upstream 587048 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 708592 14447711 ~ 14456695 (-) True G99213

Expression Profile