RNA id: TU123546


Basic Information

Item Value
RNA id TU123546
length 1351
lncRNA type sense_over
GC content 0.46
exon number 6
gene id AMCG00015606
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13671315 ~ 13845677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccgCCTGCCTTTAGCACACTTATTATCAAAGGGAAGAGAGGAGATAGGAAGAGATTGCCGGAGAGGTCGatacagagatggagagaaagagctGAGAGGGGTAGTAATGACGGTGCAAGTAAGAATTTACCCCAGGAAACCAAAGGAGTCCAAATGAACTGAAAGAAgacagaatgaaaagaaaataataatatttcaacgCTACAAACGACAGCAGCGAATGGAAGGAAATGGATGAACAATAGAAAGAAAGGTTCAGTCAAATGGGGGAAAAATCAAAAGAAGGAAACATTGGAAAGAAATACCGAGAAAGTGGaagcagagaaagagacagtttTGAATAATCTGCGGTTGTGTCCTGTCACAGTTCAATTCTGAGAGCTCATAGAAGGACACATAGaaagtgacacacacagacagaaaggcaCATATACGAAAGACAAacgcacaaaaaataaaaaataagataaactaAACGTCGAGAGACACGCAGAAAGGGACACAGACAGTCCAGCGGACGAGAGAGCGAGAAAGACACGCAAACAGATGTAACGGTTTTTGTAACCAGGTATAGCACAGTGAATTACGGGGGGACACATCCTGCCTACTTCGGGAGCGGGACCCGGGTGGTGGTTCTCGtgcGTGACAAAAAggccccctctgtctctctcctccctccctcctgtgAAGAGGTGAAGAAACGACACAAAGCCACTCTGGTCTGTGTGATCCAGGACTTCTACCCTGAGATAGTCTCTGTGGTCTGGAAGAGAGAGGGCAAGGTGATTGACAAGAGGACCCATCTGGCTGAGCCTATCAAGAGCTCAGAGAAGGGACTATTCTCCACCACTGCCAGACTGACTATTTCTGAGAAGGCCTGGCTCAGGGGTGGGACTTACAGCTGCGATGTCAGTCATACTACTCTCATCCAACCATTGGTCAAGACTGTCACCATCCCCGGACTGGGCTCTCCACAGCAGACTCTACGAGTGGCCAAACTGTCCTTCTCTGTGCTGCTGAGCAAGAGCCTGTTGTATTGTGCCCTTATCAACACATTTCAGgtacTCAAGgtctacagaaaaaaacattagtgTGTGTACTCTGCAGCGAAGAGATGCTGGACTCCAGTGAGCCAACACAGACAGAATTGTACCAACGTGGACCAAACCACTCTGGCCTGCAGACAAGCTTGTGACACAGAAATTAACTGTGTTGCTGTAGGCAAATGCTGCaccgcacacagacacagctaaataagatgaataataatataatgcaatgAATAATTGCTCTCTTggctttttattaatgtaaagaaGTTAAACTCAATAAAGACAAACTACTTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123574 lncRNA downstream 130953 13579725 ~ 13597723 (-) True G99002
TU123527 lncRNA downstream 187719 13538527 ~ 13540957 (-) True G98993
TU123526 lncRNA downstream 188678 13539618 ~ 13539998 (-) True G98992
TU123501 lncRNA downstream 209156 13464858 ~ 13519520 (-) True G98973
TU123470 lncRNA downstream 312176 13396647 ~ 13416500 (-) True G98950
TU123572 lncRNA upstream 53149 13787907 ~ 13810895 (-) False AMCG00015606
TU123556 lncRNA upstream 56290 13791048 ~ 13845677 (-) False AMCG00015606
TU123614 lncRNA upstream 99759 13834517 ~ 13840231 (-) False AMCG00015612
TU123615 lncRNA upstream 99759 13834517 ~ 13840231 (-) False AMCG00015612
TU123616 lncRNA upstream 99759 13834517 ~ 13839676 (-) False AMCG00015612
AMCG00015601 mRNA downstream 62899 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015603 mRNA downstream 103971 13606375 ~ 13624705 (-) True AMCG00015603
AMCG00015599 mRNA downstream 207662 13520664 ~ 13521014 (-) True AMCG00015599
AMCG00015598 mRNA downstream 259854 13458554 ~ 13468822 (-) True AMCG00015598
AMCG00015592 mRNA downstream 274900 13442591 ~ 13453776 (-) True AMCG00015592
AMCG00015605 mRNA upstream 6139 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015604 mRNA upstream 19310 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015613 mRNA upstream 92219 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015612 mRNA upstream 103193 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015611 mRNA upstream 131093 13865851 ~ 13869990 (-) True AMCG00015611
TU123499 other downstream 268887 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2312014 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2342477 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 2467508 11233315 ~ 11261168 (-) False AMCG00015535
TU123617 other upstream 106471 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 106471 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 106471 13841229 ~ 13864738 (-) False AMCG00015612
TU123831 other upstream 591409 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 712953 14447711 ~ 14456695 (-) True G99213

Expression Profile