RNA id: AMCG00015612


Basic Information

Item Value
RNA id AMCG00015612
length 3287
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00015612
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13834517 ~ 13864738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaatattatttagtattttgctTTGGATTATCACTAATCTAATGTCTTGACTCTCTTAACTGTAATCACCGTAACCCCCAAACAGTAAACACCTAGAAGTATCATATTTTGTaacatctctctttctcagtgcagtcagtcagagtgtgtgtactttactgtattaaatatttagtgcATGTGTTTAGTCTGTGTGTCTATACTGTCCTGTAGTAaccatctctttctctgtctgacTTCTGTCAATTTTTGCACAAATTCTGCCAAATATTTTGCCTCTGTAGCCAAAGTTTGTTCTCTACAGCTGTCCACACTCATaaacgcaaacacacacagcaccttgttttctctctatctctctctccacccatCTACACTCAGTGCGCTTAAATTCAAGGTTTCAGACTCTTTGTTAtacctcttcctccccctctctttcattctctctcttgaTTTTGAATCTTGAGTCCACTATTCACCTCTCAACAATCCAGCAATCTCAACCCTCTTCCTGTATCAAATTTTCCACCGCCTTGCTCTTTCTCCCTGTCTGGGCTATGTTGAACTCTGGGGGCTCCCCGTGTCTAACCAAAAGCTGGCCcccgtccctctctctctgaccacTGTCTCCTCAACTCTcacttctcctctccctccctccctctgtttgTTCCTCCCTTGTCCCTAGGCTCTAACCACTAGGGCACCCCCtccctcgtctctctctctcgctctctctctgtgtgtcagtatgCCCAGTGTGAATAAGTCCTCTGGAGGGGCCACCCCCTCCTCCCGCAGCCTCAAACCTAGCAAGTACATCCCTGTGTCGGCTGCCACCACCTTCCTCGTGGGCTCCACCACCCTCTTCTTCGCCTTCACGTGTCCCTGGCTGACGCATGAGTTCTCCATGGCGATCCCCATCTACAATGGTGTtgtcttcctgtttgttttggcCAACTTCTGTATGGCCACATTCATGGACCCTGGCATCTTCCCTCGAGcgGAGGAGGACGAGGATAAGGAGGATGATTTCCGGGCTCCTCTCTACAAGACAGTGGAGATCAGGGGCATCCAAGTGCGCATGAAATGGTGCTCCACCTGCCGCTTCTACCGGCCGCCTCGCTGCTCACACTGCTCCGTCTGTGACAACTGCGTGGAGGACTTCGATCACCACTGCCCCTGGGTGAACAACTGCATCGGCCGGCGGAACTACCGTTACTTTTTCCTGTTCCTGCTGTCGCTCACCACCCACATCATGGGCGTCTTCGGCTTCGGTCTCCTCTTCATCCTCTACCACAGCCAGGAGCTGGGCGGAGTGCACTGCGCAGTCACtatGGCAGTGATGTGTGTTGCTGGTCTATTCTTTATCCCAGTAGCTGGTCTCACTGGATTCCACATCGTACTGGTGGCCCGGGGACGCACCACTAATGAACAGGTGACAGGTAAATTCCGAGGGGGGGTCAATCCCTTTACTAATGGCTGCTGGAAGAACGTGTCTCACGTACTGTGCAGCTCGCAGGCCCCCaggtatcTGGGCCGTCCTCGTCAGGAGCAATGTGTGGTGGTCAAACCACCATTCCTGCGGCCTGACCTGACGGATGCCCAGCTGGGGGGCAAGGTGCTGGACAATGGCATCCAGGGGGATCTGCACCACTCACGGTCTAAGGGCAGTCTGGAGGTGATGGAGAGCCAGTCTGCCGATGCTgagccgccccccccacccaaaccAGAGCTGCACAGATACCCTGGCCTGAGAGCCCAGATCTCACTGGGGCCCACAGAGGTGGCAATCGGTCGATCAATGAGTCGGGGTGACAGTCTGAAGGAAGCCCCCTCTATACTGCAGTCTAGCCAGCATCCCAGCTACCGCTCTGAGCCCAGCCTGGATGGGGGAGTGGGGGCAGGAGGAGGGCCGGGTGGCTGCCCAGGAGGCGgtggcggaggaggagggggaggcggAGGGGGGATCCCAGGGTACTCCCTCGGGGGGCGCTCGTACCCTTCCTTCAGCGACCCCCCGCCACAGGCGCTGTCGGGAGGTGCCTCGCGCTCGTCCAGCCTGCGTTCCACCCACACGGCCCACAATGCACTGGGCACGCTGCACTCTGAGGGCACCACCTCCACCAGCTACAAGAGTCTGGCCAACCACACGCCCCGGAATGGCAGCCTCTCCTATGACAGCCTGCTCACCCCCTCTGAAAGCCCAGAGTTCGACAGTGCGTCAGCTGAGCTGCAGTACCGGAGTAAGCCAGCGGGGGGCGGCAGTGGTGCCAGAGGGGAGATCCAAGCTCCCAAGGATGAGATTCAGATGAAATCCTTCAGCAGATCCAATGGGCAGCCCAGGTCCCACTTCTCCCCTTCGccttctccctccttcccctctTCCCCCCAGCCACGCCCCCTCTCCCCAGCACCCCACTCAATCAGCTTCTCTGCCCGCCCTGgcagggaagggggtggggTCTCAGGCCTGGCCAATCACCACAGTGCTGCAGCCACCACTATCACCTCCACTGCTCCCCTCAGCCCCACCCCCAGGCCCCAAGGGGGCGGGGTGAAGAAGGTGACTGGTGTGGGAGGGACCACTTACGAGATCTCTGTGTGAGAGACTGACAGCTGGGGTGGGGGAGTGGCAAGGGGGGTCTggccagccaatcacagcgcatggatttatttttttctatattaaaaTTCTCTCCTCCCGAaaccccaccctctctctctctctggaagAGCACGCCTACCTACTGACCGACCTGTCTGTCAACCCTCCTACCCATTCCTCCTGATTGGAAcacaggaggaggaagagagtgGCAGGAGAGACTAAAACGGAGAAAGACAGATGCCTGATTTCCATCCCTCTCTTTCCTCCCTTCACTGTTTTACAGCCTTTCTCCATAAGAGGACAGACTCTACACCCCTCTCTCCTGTCAATCTGGAGAATAGAGAAAGGAGAGAACAAaaaggagggggtgggggtgcacaCACCTGCCTGTCTGGGACTCTGGTTTAGAGAAGGATCCCAGTCATTAAGCAGACCGCTTCCTAATGAACGAACTCTTATGAACGAGAGAGAAGTGCGGGaagtaaaaggaaaatgaaatgtgacaCAGGCAGAGACGACCAATCACGTGCACCCGGAGGCGGGACTCTCTTCAAATGGCCAGTAGCAGACAAGGACACTTGGAGTGACATCTGGCCCAGCGCTGGGCTTAAGGAAGGGAGACCTAGAGTGGGGATTTGCAGGGGACTACAAAGACTCTTTACAGACAATACACag

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123577 lncRNA downstream 21424 13579725 ~ 13816527 (-) False G99002
TU123572 lncRNA downstream 27056 13787907 ~ 13810895 (-) False AMCG00015606
TU123537 lncRNA downstream 103193 13728676 ~ 13734758 (-) False AMCG00015606
TU123546 lncRNA downstream 103193 13728676 ~ 13734758 (-) False AMCG00015606
TU123550 lncRNA downstream 103193 13728676 ~ 13734758 (-) False AMCG00015606
TU123633 lncRNA upstream 32340 13883123 ~ 13884670 (-) True G99049
TU123635 lncRNA upstream 50573 13901356 ~ 13902314 (-) True G99051
TU123639 lncRNA upstream 67292 13918075 ~ 13918324 (-) True G99055
TU123642 lncRNA upstream 74465 13925248 ~ 13931122 (-) True G99058
TU123648 lncRNA upstream 183475 14034258 ~ 14038303 (-) True G99063
AMCG00015613 mRNA downstream 8229 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015604 mRNA downstream 77221 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015605 mRNA downstream 95716 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015606 mRNA downstream 99165 13722074 ~ 13738786 (-) False AMCG00015606
AMCG00015601 mRNA downstream 172174 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015611 mRNA upstream 15068 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015614 mRNA upstream 206556 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015615 mRNA upstream 228711 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015623 mRNA upstream 246642 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015620 mRNA upstream 263211 14113994 ~ 14118650 (-) True AMCG00015620
TU123543 other downstream 98832 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 378162 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2421289 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2451752 11353783 ~ 11386199 (-) False G98543
TU122906 other downstream 2576783 11257278 ~ 11261168 (-) False AMCG00015535
TU123831 other upstream 475384 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 596928 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 630411 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 719868 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 723583 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile