RNA id: TU123616


Basic Information

Item Value
RNA id TU123616
length 3930
lncRNA type sense_over
GC content 0.47
exon number 2
gene id AMCG00015612
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13834517 ~ 13864738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agactCTTGAGCTCCAGTTCCCCTGCTGTGTTTCttgctttcattattattattaatattagtatcaTAACCTTCATCTGTATTAGGTACAGAGTAAAGGGACACTATTGCTCCAGTCATTTTATAGTCAGCCTCctctatatttgtttttgtttgtgtattattttaaaattgttcatATAGTGCTGTGTGCATGTGCTTTAGCCATGGCGTGCTTGTCAGAGATGATATCtcactgacactgtactgttctgcactctgctgtattgcactgtaatgCACTGCCTGTGACCTTGCTGTCACTGCTTGACTATCCTCTGCCATTCTGACCTGTTCCTGTATTTCAATTCACTTCAATTCTTCTTCAATGGGTTTCTACACATCACAGTaactgtgaatgtatttatacaacTGGAGTACACTGACTTGGTGCCACTGtagtgtactgcactgcactgtactgtatacacctggagtacacACACTGCCTGGAGCCCCTGAGCCCCCTCAGTGTTTCACATTAACAGTAAATgtaattcatgtttgtttgtttgaactcGGGGCAAAGTGAAAGTCCCtgattttcttgtattttttttttccttttccctgcATTtactccctctcctctccctgacTCCTGGACTTCTCGCACCTCCCCCCcttctcattctctctcccctttctgATTCTCTTCCTCGAcccttctttctctccctctctctctccctttcccagGGATGAGATTCAGATGAAATCCTTCAGCAGATCCAATGGGCAGCCCAGGTCCCACTTCTCCCCTTCGccttctccctccttcccctctTCCCCCCAGCCACGCCCCCTCTCCCCAGCACCCCACTCAATCAGCTTCTCTGCCCGCCCTGgcagggaagggggtggggTCTCAGGCCTGGCCAATCACCACAGTGCTGCAGCCACCACTATCACCTCCACTGCTCCCCTCAGCCCCACCCCCAGGCCCCAAGGGGGCGGGGTGAAGAAGGTGACTGGTGTGGGAGGGACCACTTACGAGATCTCTGTGTGAGAGACTGACAGCTGGGGTGGGGGAGTGGCAAGGGGGGTCTggccagccaatcacagcgcatggatttatttttttctatattaaaaTTCTCTCCTCCCGAaaccccaccctctctctctctctggaagAGCACGCCTACCTACTGACCGACCTGTCTGTCAACCCTCCTACCCATTCCTCCTGATTGGAAcacaggaggaggaagagagtgGCAGGAGAGACTAAAACGGAGAAAGACAGATGCCTGATTTCCATCCCTCTCTTTCCTCCCTTCACTGTTTTACAGCCTTTCTCCATAAGAGGACAGACTCTACACCCCTCTCTCCTGTCAATCTGGAGAATAGAGAAAGGAGAGAACAAaaaggagggggtgggggtgcacaCACCTGCCTGTCTGGGACTCTGGTTTAGAGAAGGATCCCAGTCATTAAGCAGACCGCTTCCTAATGAACGAACTCTTATGAACGAGAGAGAAGTGCGGGaagtaaaaggaaaatgaaatgtgacaCAGGCAGAGACGACCAATCACGTGCACCCGGAGGCGGGACTCTCTTCAAATGGCCAGTAGCAGACAAGGACACTTGGAGTGACATCTGGCCCAGCGCTGGGCTTAAGGAAGGGAGACCTAGAGTGGGGATTTGCAGGGGACTACAAAGACTCTTTACAGACAATACACagatttttaatgaataaatacatatatatatatatgtgtgtatatatatatatatatatatatatatatatatatatatatatacatttcttaaataaaaaaatataaactacaGAAAAAATCCCAAGGACTACATTTCAACTTTCCGCCAATGGGAGAGGCAACCCTTGGTCTTTGGGGGGGTGGGACTTTACAGGAAATTTCAGGCAATAGGCGCCCTGACACAGACTACTTGGACCACTTTGATTGGCCACAAGACTGTGATTGTGTCCTGAGTCAACCAATATCTATCAAAGGGGGCTTTTCAGGAAATGTACCACAGGAGCAGCAAATGGAGGATGGAGTGGCTGCGAGTGACAGGGACAACAACCAATGACATGGCTTTGATTGTGTGTAGACTCACTTCATGGATGACAGGGAagacttttgtttatttgcattgtttttttatcttattttatataaatatatgattttattgttatttttcatattcaaGAGGAGTTTCTGCAGCAGCCAATGACATTCAAGattggagggggtggggggaccaCTGTTTTTCCTATCATGATTGATGGCTGTGTGGACTAGTCAGAGCCTAAGCTGTATCTGGCAGCCGCCGTCAGTCAGTGAGAGAATGGGGTAGTATAGGCAGCTTGTACCTACAAGAGTGAATAAGAGTTTCAATCGGTACAGTACAGTTTCTTCCTTATATTAGCCAATCAGCAGCTTAGGTTCACTGTTTGCAGTGATTGATGGCAGATAGCTTAAAAAGGTAGTCCAGCTCTGGTGGGTGGGGCCTAGCCAGTATGACAGCCGGTTCTGATTGGTCATACAGCCACTGGGAAAAGATGGTAGAGTGAGGGTAGGATCAAATGAGGACTGGCTGACAGTTGGGTCTGCTCTTTTGTCTTCAGATAAAGTGATTGATCTGTAGGTTCAGGCAATTGGAACAGAGGCAGAGATGCTTAAATGGCAGCAGCTGCTCACCAATGGGAGGGGGCAGGGCTTTTACCAGCATgcgaggagaggagaggagaggagtaaCTGACTCAATCTGTGATGTGAGTGAATTTACTCTCACCCACATAGCCAATCACTTACTGGACTTGGGGACTTACTGACTGGAGAGCCAGTGGAAACCTTGTGTATGGGGGGGCAGGGATTCTGGTAGTGTGGGTGGCAGCAGTCTGCATCAATGAGAGACTGGCCCTGATGTGTGCTTGCAAATCAGAAACCGAGAGGCGCATGTCTTTGGTTGTCTGTGTAgtcatgtctgtgtgtgagagcaaCCGCAAGAACGAAGTGAGAGCACAGAGGCGATGTCTACAAGAGCAGCTGTGTTTTGGGTCTGGAAAGACACTTTTTGCCTGGCCTAAATGGGCACTGTGAACGTGGCATCAGTTTCCCAGCTGTACCCAGTGCTGAGTTGCTAAACACAtgtacctatatatatatatgtacctatatatatatatataggagtgTGAAGATGGCAAATGGTGGTTAAACATAGCTGTACTCCTGATGAAACAAATGTGTCTGTAATAGACTGTAAGTGTGTCACAGCAGTGCCGTACTGGGTAGAGGTCACCTGTCCGAGGTTGCTGGCAGGGACCTGCAGggataaatacagaaataaagaattaaGTTGAAGAGCAGCTGTGTGGGGTCAATTGGGGGGGGAAAGGGAGGTCAGTCATATGGGGTCAGAGGACACAGCTGAGAGGTACCAGGGGGCTGGACTGGACGATACAAGGAAGAAATGCTGGTTGATGCAATGACTGACATagtaaatcaacaaaaaaataaaaaaaaaaaaaagtttaattccaaacaataatacaaatctggATCAAGTTTCTAAAACGTTTCAGTACGGTTCTCAACGCTCCACCCCCCAGCTCCTAGCTCCCAGTTCGGCATCTCTCCTCCCAGTCCTTAGGTCACCACAGCGGGCGCGGCCGGCCCGGCCTCTACTTGTCCTTCTTGGTCTCTGTGTCTGGCTCCGCCTCCTCGGCCTGTGCCTCTGTCATGTCCTCCTCTGGCAGGGCGGGGATTGATGGCTCGTCCTTCTTCTTGGACAGTTTCTTGGACTTCTGGTAGAGCTCGTTCAGGTTGAACTCGCGGATGATATTCTCCTAGAGGGAGAATATCGGTCAGTACGTTCCTTTTAATCAGTGTTATCAGCATCAGGACCAGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123577 lncRNA downstream 17990 13579725 ~ 13816527 (-) False G99002
TU123572 lncRNA downstream 23622 13787907 ~ 13810895 (-) False AMCG00015606
TU123537 lncRNA downstream 99759 13728676 ~ 13734758 (-) False AMCG00015606
TU123546 lncRNA downstream 99759 13728676 ~ 13734758 (-) False AMCG00015606
TU123550 lncRNA downstream 99759 13728676 ~ 13734758 (-) False AMCG00015606
TU123633 lncRNA upstream 43447 13883123 ~ 13884670 (-) True G99049
TU123635 lncRNA upstream 61680 13901356 ~ 13902314 (-) True G99051
TU123639 lncRNA upstream 78399 13918075 ~ 13918324 (-) True G99055
TU123642 lncRNA upstream 85572 13925248 ~ 13931122 (-) True G99058
TU123648 lncRNA upstream 194582 14034258 ~ 14038303 (-) True G99063
AMCG00015613 mRNA downstream 4795 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015604 mRNA downstream 73787 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015605 mRNA downstream 92282 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015606 mRNA downstream 95731 13722074 ~ 13738786 (-) False AMCG00015606
AMCG00015601 mRNA downstream 168740 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015611 mRNA upstream 26175 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015614 mRNA upstream 217663 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015615 mRNA upstream 239818 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015623 mRNA upstream 257749 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015620 mRNA upstream 274318 14113994 ~ 14118650 (-) True AMCG00015620
TU123543 other downstream 95398 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 374728 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2417855 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2448318 11353783 ~ 11386199 (-) False G98543
TU122906 other downstream 2573349 11257278 ~ 11261168 (-) False AMCG00015535
TU123617 other upstream 1553 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 1553 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 1553 13841229 ~ 13864738 (-) False AMCG00015612
TU123831 other upstream 486491 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 608035 14447711 ~ 14456695 (-) True G99213

Expression Profile