RNA id: TU123618


Basic Information

Item Value
RNA id TU123618
length 8792
RNA type TUCP
GC content 0.44
exon number 11
gene id AMCG00015612
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13834517 ~ 13864738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCGCCACGGGAGAGGATGGAGGAGTCGCGGCCGGAGCTCGCCGTGTTGTGTGTTTCGAGCTGCCTGCACTGGCGTGGAGAGAGAAGACGGTCCTTCTGAGTCTTTCTCCCGTTCAACGCCGACTGACTGACGGTCAGTAGAGCCGTCCGATCGGCTACAGACGGACAGCGAGGAACGGTTTATTAAAGGTGTATTGTgcgcatttttattttggaggtGTTTTGTACAGAAGTGTTCTGCCCGGACCTCTTTCGTAagggatacacacacacacacacacacacacacacacgactcCGAGGAGACAGACGGTCAGGCGTCGTcgagaagaaataaataatcattagaAAATACATCCACACGCACTGATAACGGCGTGTATGTGTGGAGTGAGTCTCTCTCCATGTTGGTGTTATCgctgtgtatttaaacacactgtccGTTTAAAGACGGTTTAGAAGGGAAATAACTCGCAAGTCTTGTGAGGACGGAAGGGTTTTGCAACAGATATCAGCTCTGTGTGAAGACCGTTtgtgtggaaatatatattattccgTCGCCGGGACAGTAAAGGAGAATATTGTGCGTTTTCGTGCTTGTTTATCTCCCTATTggactatttttattatttacacatttggggtgttttatttttattttcggGGAGGAACCGGGCGTGTGTTTTACCCGACGTCTCTGGACTATAACCTGGGACTGCTGCTCATCGGCGGAGACCTCGTCTCCCCCTCCCCTAGTCCTCAGTCAGCTCCCTGGCGTCTCTGCGACCGAGGCCCCGCACACGCCACGGGCTGTGCCGCACAGTCGAGGCCAGGTGGGGGCCCGCCCAGGCCGCCTGAGGAGGCGGCGGCGAGCTCGGGGATCCAATCTGCGGCCTTAGTCAGTGGGAACCGCAGCGCACCGAGGGAAAGCAACACACCCAGAAAAAACACCCCCCTCGCACAAAATAAGGACGGACACCGAGAGCTGCCCGAGTGGAGCCGACAGAGGCCCAAGCGACACCGCAGACCTGGATAGACAGAGCAAgaattcagagagagagagagagagagagaaagaaagaaagaaacggACATACAGGAGCAGCAGAAGAGTTCAAGCACACTGGGTTTCCAGTCTCTGATTTTCCTTTCCTGGGGAAGATTTGTCAACCATCCAAAGAGGAGCACATAGACACTATTGCCAAAGCTGGGTGTGAGATAGGATATCGAAGTCAATTAACAAAGAAACACTGATTTTTGATACTTCAGTTCAGTGGAATTCGTCTCAGGAGGAACTTCACAGTTGTATCCAACAGAGCAGCAgcaaatatatatcaaataacCGAAGGAAATTTCTGTCACGGAGAGATTCAACCAGGAGTCAATTGATTTTTATATCCTGTTTTAAGAAAACAGTTAGAATGGATCTGTAGGGAGGCAACGAGACCAGCAATCATTTTGTCAACATTACacctctctgtttctctgtcttctgtttgctttattttctccCTGGAAAGAAAAAGTGCGAGAGCAAGGAGGGGCTAGGTTTTGGGTCGTGTTTGGGTTCACGCAGTtactccctgtctctctctcggggaaaaggaaaggaaaaaaaaaaaaagtctagtcAGGGTTTGCAAATCTCAGGAAGGAACCCAAAGACATTAAAGAGTTTTTTGCATTGTAACCTTACTTCTAACATTGTtacctttcttcttctttttaatgccTGAAGATAACTCTGTCCTTGACCCAGCTTCAGAACTGATCAACTGTCTAATGGAACAACAATTTTGCAGCCACTGCGATATCCCAGCCAGATCAAATATCTTTCCCTATATTTGAGTTTTCCCTTCTCATTCGGATACAGTTAtaattctatttttgtttagttttttccaattCAACACTTGGTGCTATCTCGTTCTCTCTTTTGAAGGACAGAGCTGGAGTTTTTAGCGTAAATGAGACACTTTAATCTCTGATACcaaggccacacacacacacagactcgcAAATTTAAACTGACTGCAAACCTCGGACTGTCTAGAACGAAAATCCTACAGAGTCgaatggatttttaaaattgaaattacctttttttcttaaattttcctttcacattatttttatttttttgagaccttttttttttttagtaaggATCCCGAATCCAACAAGGACAAatttatgaaacaaacaaataacagccTTTCTTTTTAAGGTTTTTCTCGTGCACCGTCTCTTCACATCATCTCTGGAATCTTCacactgaattatatatattatatatatttttttaatttaaagtggtTTTAAAACTGGCTCAGATTCTTCCACCTTGAAAAATACCTTGCCTGGATGTACTAAAGAAACCTGTTTGGACATCAAGTGAAACTACTTGCCTTAAGAGagaattcaaaaagaaaatctatGAGCTAATATGAAACTCCAGTTCACTTTTGCTCTTGTCTTTCAGACAGGATTTTAAAGCCCCTTGTCCCTCACAGACTTGGCAAACTAACTGAACACTGTCTCTATTATTCTGTAATGTTACCCAACATACAACACACTGCATTTGTCTAAAACTGAATCACATACACACTAATCAGTTGGTCTAAGATTTCCTTAAATCTCTTgcctcacacacacgcatgcatacaCTGccctgtcactgtgtctgtagcCTTGACGTAGCGAACACAGTGTATTTCTGAATCGTGGTCTAAGATCCTCTTAAATaaccttctctcctctctctctctctctttctttttctctctcacacacacacaagttctCTGTTCTGTAGCTCGTGTGGCTCAAAGCTTTTCCAAACgctttatttcatattcatttaaCCAAGAGACCCCTATGCCACACactccaaaacaaaaccctgtctTTTAAGACTAATATATTACCACATTGCAGACACAcgtaaatatataaacatacacattacTTTATACTCTGTTTAGCTATCACAGCTCACTACTGCAGTGTAAACCTAGACCTTTGAGACACCCACTAACTCCTTGGTCCATTTCTCACTGTGGATTCACATAGTCAAAAGGGCTAACTGGGACACAGTCCACTTCTACACGACTGATCATTTTCCCCCACCCCACAAGAAGAGCCTCCAAGTCTTCAAGTTTCTTCTGAGTTAGTTATAATACTGGGCCGAAATCtagttaatacatttaaagcatgtaagccatttctgtattttctttagaaataaaaggactccatatatttatttatttttataacccCCTCCAAAAATTAACACGTACATTCTACAAAGCAGACTATTGCTTGTACTTAAGAAACAAACGTTAACCCTTCAGAAATAAGTGTCCAAATTCATATCCATCTAGTTATAGATTGGTAATAGTATTGAATATTAAAGTCCAGGGAACTGCCTCCTCTCTCGCACTCGCTCTCTACCACTCtacctttccttttttttgttttgtttggcattCTACCTTTTTTCCCTCCCATCTTCCACCACTACTTCTGATCTAGTTTCTCTCTCGGCTGACGACACTCCCCTCTCTCTGATTTCAAAAAGCtagtgtacatgtatgtattttaaaatccaacCAAATAATGCATCTATAACTCCTCTATTTTCCATACACCCCCCAACAAATCtcctaaattaatattgaagaATTCAACACGTGTATATCTATAGATTTATATcagtaaactgaaataattagCTTTGGTTTGCATGTTAAACAGGACTggtctttatttaaatgattgctcatatatgtatgtaaaaagtGGAccctaacattttaaatatagacaGCCATCCCTTTCACTGATTAACACACTTGTAATTAATCACTTCCACATGccatataaataattcaatagaCCCCACCCTCTACGATCTCTTCctcaaataaacaacagcaaaacaaaaataattatattcgtTCTCGGCAGTAATAATATACACAGCCGGGTTTGTGCAATTTGCTGTTAGAAAGCGtgtcatttagaaaaataaatccctcTTCATTAAAACATCCCAATTCCACATCTGTCTAGAAACGCtttgtaaaaatacacataatttcTTGttctatttttctgttttatttttcttatttcttaattCAAGAATCTGAAATTTGCTTccactataaaaaaataacaggttATTCTTCCCTTTGTACCCACAACAAACTCATTGAAGATAGTTCTGAAATCACtcgtatttaaattatttctgcCTTCCAAAATCCTGCCTCATTTCCTCGATCTTTCCAACTGTCCAAACTGTAATAAAAGACCAGACTGCTCCACATtaaagtagtagtaataatctCAAGCTATATTTCCAAAttgatataaaaacaatgcataacAGAGTCCTGTATTTGATTTAAACCTACAACATTGAGCAAAAATACCAAGtcctaatattaataatataaatcacacCTTTACTTTAAATGTCATTCATCTTGCCAATCCTGATTTATTCTCTGATCAGCCATTAACAAATAACAATTCCCACCACCCACCACTTTCCTAACCCCATTGTTAGGAATTAAATTGATGCCACCCTAAATGTTAAAGATTCTCCTGATCTCAAGTACCACCACTTAACTTTTCCCTAACACatgtgcaataaaatatatttgtacatagAATTCTAAATATCAGGCAATGTAATTAAACTCCGTGCATATCAATATTTGAAGTCTGTTTTATGGAGACAGTTCTTAAGCACATACCTGCTTGTGAGGATTGACTACTGTAATCCCCCCCACACTACGTTCTTTGTAACACAGCCTCCCTGATTGCTCCGCTCtgtccatttatttatgtattagtctattttaattgcttcttCTTATTAACTCCCCATCCATCGGTTTGCAAGTGCACAGTTTTGACAGAAAGAAGTACAGAAAGCGAAAAGGGGCAAACAAAGCTCCACAagtccaatacatttttttcccagcTGCTCTGAACCTAAATAAGTAGACATATTTGCTTCCCATCCATATACCCAAACCTACACCATAACGATCGTATTTTTGCATAGGCAGTGGCTGTTAGGTCCCCAAATATAAAATTGCACTAGATGGGTAACTGTAAATCAATTTGAAGGATAATATTAATAGATCTCTCTATAACTATATCTataaacataaatcaatactttttttccccctctcatCTCGTTGGGTTTAATTGTATTACCAGGGTGACCTAGAACGTGCCGGGTTTTAATCGCCACAGGATTAGGACATCGCAGCTCTGAGCACCGCTACCAGACAGAACGGATTAGCACCGTTAAAGCCCATTGCGAACCACAGCCAAGCTCGTGTGTAGAGAGCTGTACTAGATTAATACAGTAGACCTGTACTCACTCGGGCCTGCGGAGAATTGTGCTTGCATTTGGGCTGAGAGACTATTCCTTCTTTGTGCACTCATTAGTAAGAGATCTTAccagtttttatttcaacacacacaaagaaagccATAGATTATGATTTAGTTTTCTGGTGAATTAAATTAAGCTTCTATTTTTTGCCTCCGTCAACGGTCATAGTtatataccaaaataaatatttgtattattgtttttatttattttactcacGCTGTACTGTGATACACACTTCTCtacctgtatttattaatacacatttgGAGCCGGAGTGTTCTCTCCCAGGCATATAGTCTACATCAGTGctgttttaaacataatttttcaGATCCACACTGTTTTAAAggaaatctatatattttttagtctTTCTATAGTGATTGTATTGAGAGAAAGTTCACCTTTAGGAATCGCAAAGTCCTCGGCAGTGAACGGGAAGGGAAGGAAAAGTGCAACCGTTTCCGAATCCTCTCCGGAGTGAGTTTCAAGTCTATCGTTTTAAATAAACCTGCAATAATTTGCTTCCAAACTCATTATCCCAGTTTTAGTCTCATTGCCATTGTTAATGCCCACCTTCATCTTATAGAAGTAGCACAGTCACGTGTCTTCAAGATTGAGCCAGCAACCACATCAGCAACACTTCTTGGTCCTTTGTCCAAAATCCCCTGAAGTCTAACCCTTTTTGAATTGAATACCTTTTAGAGCACCCTTCACTAAAGTAattgtattctctctctctcctgcctctcAAATCCATTCAACCAATCAGACAGTTCCTCTCACTGTAAGCTACCACTGCCAAACTCTGACCCACTAACTGAATCAGCCTGTCTGGAATAAATGAATCCTCTCTCACTGACACCGCGCTTTGAAACCATTAACAGCATAGGGAGTCAACAGTCAGACTAACAGTGCTATAAAGTGTGCTAACAATACACACACCAGGAAGGTTCATTACAGAATATCCCCTCATTTTTATTCAGTGTTCTTAAAATCccaataaattaatcattattagtaatattatttagtattttgctTTGGATTATCACTAATCTAATGTCTTGACTCTCTTAACTGTAATCACCGTAACCCCCAAACAGTAAACACCTAGAAGTATCATATTTTGTaacatctctctttctcagtgcagtcagtcagagtgtgtgtactttactgtattaaatatttagtgcATGTGTTTAGTCTGTGTGTCTATACTGTCCTGTAGTAaccatctctttctctgtctgacTTCTGTCAATTTTTGCACAAATTCTGCCAAATATTTTGCCTCTGTAGCCAAAGTTTGTTCTCTACAGCTGTCCACACTCATaaacgcaaacacacacagcaccttgttttctctctatctctctctccacccatCTACACTCAGTGCGCTTAAATTCAAGGTTTCAGACTCTTTGTTAtacctcttcctccccctctctttcattctctctcttgaTTTTGAATCTTGAGTCCACTATTCACCTCTCAACAATCCAGCAATCTCAACCCTCTTCCTGTATCAAATTTTCCACCGCCTTGCTCTTTCTCCCTGTCTGGGCTATGTTGAACTCTGGGGGCTCCCCGTGTCTAACCAAAAGCTGGCCcccgtccctctctctctgaccacTGTCTCCTCAACTCTcacttctcctctccctccctccctctgtttgTTCCTCCCTTGTCCCTAGGCTCTAACCACTAGGGCACCCCCtccctcgtctctctctctcgctctctctctgtgtgtcagtatgCCCAGTGTGAATAAGTCCTCTGGAGGGGCCACCCCCTCCTCCCGCAGCCTCAAACCTAGCAAGTACATCCCTGTGTCGGCTGCCACCACCTTCCTCGTGGGCTCCACCACCCTCTTCTTCGCCTTCACGTGTCCCTGGCTGACGCATGAGTTCTCCATGGCGATCCCCATCTACAATGGTGTtgtcttcctgtttgttttggcCAACTTCTGTATGGCCACATTCATGGACCCTGGCATCTTCCCTCGAGcgGAGGAGGACGAGGATAAGGAGGATGATTTCCGGGCTCCTCTCTACAAGACAGTGGAGATCAGGGGCATCCAAGTGCGCATGAAATGGTGCTCCACCTGCCGCTTCTACCGGCCGCCTCGCTGCTCACACTGCTCCGTCTGTGACAACTGCGTGGAGGACTTCGATCACCACTGCCCCTGGGTGAACAACTGCATCGGCCGGCGGAACTACCGTTACTTTTTCCTGTTCCTGCTGTCGCTCACCACCCACATCATGGGCGTCTTCGGCTTCGGTCTCCTCTTCATCCTCTACCACAGCCAGGAGCTGGGCGGAGTGCACTGCGCAGTCACtatGGCAGTGATGTGTGTTGCTGGTCTATTCTTTATCCCAGTAGCTGGTCTCACTGGATTCCACATCGTACTGGTGGCCCGGGGACGCACCACTAATGAACAGGTGACAGGTAAATTCCGAGGGGGGGTCAATCCCTTTACTAATGGCTGCTGGAAGAACGTGTCTCACGTACTGTGCAGCTCGCAGGCCCCCaggtatcTGGGCCGTCCTCGTCAGGAGCAATGTGTGGTGGTCAAACCACCATTCCTGCGGCCTGACCTGACGGATGCCCAGCTGGGGGGCAAGGTGCTGGACAATGGCATCCAGGGGGATCTGCACCACTCACGGTCTAAGGGCAGTCTGGAGGTGATGGAGAGCCAGTCTGCCGATGCTgagccgccccccccacccaaaccAGAGCTGCACAGATACCCTGGCCTGAGAGCCCAGATCTCACTGGGGCCCACAGAGGaGAGCAGTCtgctgaatgagaccccccccacGCCCACCATGTACAAGTACAGACCCACGTACAGCAGCCCGGGCAAGAATCACACTGCCCTGACCCACTCCATCAGCAACAAGATGAGTCGGGGTGACAGTCTGAAGGAAGCCCCCTCTATACTGCAGTCTAGCCAGCATCCCAGCTACCGCTCTGAGCCCAGCCTGGATGGGGGAGTGGGGGCAGGAGGAGGGCCGGGTGGCTGCCCAGGAGGCGgtggcggaggaggagggggaggcggAGGGGGGATCCCAGGGTACTCCCTCGGGGGGCGCTCGTACCCTTCCTTCAGCGACCCCCCGCCACAGGCGCTGTCGGGAGGTGCCTCGCGCTCGTCCAGCCTGCGTTCCACCCACACGGCCCACAATGCACTGGGCACGCTGCACTCTGAGGGCACCACCTCCACCAGCTACAAGAGTCTGGCCAACCACACGCCCCGGAATGGCAGCCTCTCCTATGACAGCCTGCTCACCCCCTCTGAAAGCCCAGAGTTCGAGTCCGCCGCCCCCGAGCTCTCGCCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123614 lncRNA downstream 998 13834517 ~ 13840231 (-) False AMCG00015612
TU123615 lncRNA downstream 998 13834517 ~ 13840231 (-) False AMCG00015612
TU123616 lncRNA downstream 1553 13834517 ~ 13839676 (-) False AMCG00015612
TU123572 lncRNA downstream 30334 13787907 ~ 13810895 (-) False AMCG00015606
TU123537 lncRNA downstream 106471 13728676 ~ 13734758 (-) False AMCG00015606
TU123633 lncRNA upstream 18385 13883123 ~ 13884670 (-) True G99049
TU123635 lncRNA upstream 36618 13901356 ~ 13902314 (-) True G99051
TU123639 lncRNA upstream 53337 13918075 ~ 13918324 (-) True G99055
TU123642 lncRNA upstream 60510 13925248 ~ 13931122 (-) True G99058
TU123648 lncRNA upstream 169520 14034258 ~ 14038303 (-) True G99063
AMCG00015613 mRNA downstream 11507 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015604 mRNA downstream 80499 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015605 mRNA downstream 98994 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015606 mRNA downstream 102443 13722074 ~ 13738786 (-) False AMCG00015606
AMCG00015601 mRNA downstream 175452 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015611 mRNA upstream 1113 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015614 mRNA upstream 192601 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015615 mRNA upstream 214756 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015623 mRNA upstream 232687 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015620 mRNA upstream 249256 14113994 ~ 14118650 (-) True AMCG00015620
TU123543 other downstream 102110 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 381440 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2424567 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2455030 11353783 ~ 11386199 (-) False G98543
TU122906 other downstream 2580061 11257278 ~ 11261168 (-) False AMCG00015535
TU123831 other upstream 461429 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 582973 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 616456 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 705913 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 709628 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile