RNA id: AMCG00015614


Basic Information

Item Value
RNA id AMCG00015614
length 3004
RNA type mRNA
GC content 0.57
exon number 20
gene id AMCG00015614
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14057339 ~ 14076142 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGGGCGGGTCTGCGCAGGCGCAGCTGACCCGGGGCGCTGCAGTGAAGCAGGAAGTGAGAGGGTCGAGCTGCCTGCGCTGCTCAGCATTACAATTAACCACCTCGGAGTGAGCGCAGCTGCTTCAGAGCCGGAAAAACCTGCGTgtcagagagaggaagagaaaaacagaaagaaataaaaagaaagtctAATCTTGTACTCAGGTGCGATGGGCGCTCTCTTCCGCAGCGAGGAGGTGTGCCTTGTTCAGCTCTTCCTCCAAGCAGGATCAGCCTACGACTGTGTCAGTGAGCTGGGAGAGCTGGGACTGGTGGAGTTTCGAGATTTGAACCCTGGAGTCAATTCGTTCCAGAGGAAGTTTGTGGGGGAAGTGAGGCGCTGTGAGGAGATGGAGAAGACCTTGTCCTTCCTGGAGCAGGAGATCCAGCGCTCCATGTCTCCCCCTGTGTCTGGCCCACTGACCCCCCCCTCCCCGGCCCCACCTGCGCCCACCCCCCGTGAGGCCCTGCAGATCCAGGAGGAGAGTGAGAGTCTGGCCCAGGAGCTGCGCCAAGTCTCCCAGAACAGGGCCTCCCTCCGAGCCCAACTGGTCCAGCTCACCCAGTACCGCCGGGTCCTGCTGCAGACACACAACCTGACTGGCACTCTGAGCCAGacccctctgtctcctccagACGCTGGACTGGACCGCAGACAGGATGTCCGACTGAGtttcATTGCAGGGGTGGTGCACCCCTTGAAGGCGGCAGCATTTGAGCGGTTGCTATGGCGAGCGTGTCGTGGTTATATCATCGTCAATTTCCAGGAGATGGAGGAGCCCATGGAGGTGCCTGAGACGGGGGAGATGGTGCAGTGGAAGGTGTTCCTCATCTCCTATTGGGGGGACCAGATCGGCCAGAAGGTGAAGAAGATCTGTGATTGttatCACACTCCCACATTCTCATATCCAGAGACTCCAGAGGAGCGACAGGATGTCCTGCAGGGGTTGGAGAGACGTATAGAGGAGATGAGTGCGgtgctgGAGCAGACGCAGCAGTTCCTGCATCAGGTGCTGAGCCGTGCGGTGGCCAAGGGGGTGGGCTGGGCAGTGCAGGTGCGCAAGATGAAGGCCGTGTACCTGACCCTCAACCTCTGCAGCCCCTCCCTGACGGACAAGTGCCTGATTGCCGAGGCCTGGTGCCCCGTGGCTGAGCTGCCCAAACTGAACACTGCGCTTAAAGAGGGATCGagcaaGAGTGGCTCGGGGGTGCAGTCGTTCTATAACCGCATTCCAGCACCCTGCACCCCCCCCACGCTGTTCCGCACCAATGCCTTCACCGTGGGCTTCCAGAACATCGTCGACGCCTATGGGGTCGCCACCTACAGAGAGGTCAACCCAGcggtGTTCACCATCGTGACATTCCCCTTCCTCTTCGCTGTGATGTTTGGTGATGTGGGCCACGGCCTCCTGATGGTGCTGTTTGGCATCTGGCTCATCCTGCAGGAGAAGGACCCCATTATCCGCGACAACCCCAACGAGgtTTGGCGCATGATATTTGGGGGGCGGTACCTGGTGCTGTTGATGGGGCTTTTCTCTGTGTACACTGGCGCCATCTACAACGAGTGCTTCAGCCGCGCCATGTCGCCCTTCCCCTCCGCCTGGCACGTCTCGCCCATGTTCACCAATGGCAACTGGAGTACACAGACTCTCAGAGGGAATCCGTTCCTCAGTCTGGACCCCTGTGTCTCGGGAGTGTACCAAGGCCCGTATCCATTCGGCATCGACCCGaTCTGGAGTTTGTCCAATAATCACCTGAACTTTCTGAACTCCTACAAGATGAAGATGTCGGTGATCATCGGGGTCATTCACATGACCTTCggggtctgtctgtctgtctgcaactACAGgcactTTCGTGAGGTGTCCAGTATTGTGCTGGTGTTTATCCCTGAGGTGCTCTTCCTGCTCTGTCTGTTCGGCTTCCTGGTCTTCCTAATTGTGTTCAAGTGGGTCTCCCTGGGCTCGGACCAGTCCCGCTACGCCCCCAGCATCCTTATCCACTTCATCGACATGTTCCTGTTCACTGACAACAAGGACAACCCTGTGCTCTTCACTGGACAGctgaTTGTGCAGAAGGTGTTAGtggtgtgtgctctgtgctccgtgcctgtgctgctgctggggaaACCTCTGCACCTGTGGATCAATCACTGGAAGAAAACCCAGCGCAGGgtaggggattcCTCCCAACCTGATAGGCGCCCCCTGCTGGCCTCAGAGGACCCCAGCTCCATCAATACCAATGAATGTGATCTGGAACACGGAGAGgcggaggaagaggagTTCCACATGTCAGAGGTGTTTATGCACCAGGCCATCCACACCATAGAGTACTGCCTGGGCTGCATCTCCAACACGGCCTCCTACCTACGACTGTGGGCCCTCAGCCTCGCACACGCCCAGCTGTCGGAGGTGCTGTGGTCAATGGTGATGTCCAAAGGCCTGTCGTGGCGGGGGGCACTGGGCGTGGGGGCTGGGGTGCTGGTGCCTGCTTTTGCTGTGTTCGGCGTCCTCACCGTCTCCATCTTGCTGGTCATGGAGGGGCTGTCTGCCTTCCTGCACGCTCTGAGATTGCACTgggtggaGTTCCAGAACAAGTTCTATGCCGGTGGGGGCTACAAACTCAGCCCCTTCTCCTTCGCCACCATTCTCAACCCCATCGTTAACTGATTATCAGCCAATTAGCCAGTTAAGCCTTGTTAGGGTCCATTGACTTGAATGCTCACCACCCCCAGAGAATAAACACTGTGGTGTGGAGTGAGGACTCCTgatcccccccctcccacccacTCACAAGCTctgcaattaataataatgcttaaCGAGGAGAGAGAATTTCCATAGCTGCCTTAAACACCTTCCTTtctcttgtctgtctgtctgtctttgtctcttTTGCCCTGTCAATGTAATCcagagcaacaacaaaaacaaattaaagtttgatttttgcttttttaa

Function

GO:

id name namespace
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123648 lncRNA downstream 19036 14034258 ~ 14038303 (-) True G99063
TU123642 lncRNA downstream 126217 13925248 ~ 13931122 (-) True G99058
TU123639 lncRNA downstream 139015 13918075 ~ 13918324 (-) True G99055
TU123635 lncRNA downstream 155025 13901356 ~ 13902314 (-) True G99051
TU123633 lncRNA downstream 172669 13883123 ~ 13884670 (-) True G99049
TU123784 lncRNA upstream 13895 14090037 ~ 14091815 (-) True G99165
TU123789 lncRNA upstream 29312 14105454 ~ 14106445 (-) True G99167
TU123834 lncRNA upstream 218826 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA upstream 243325 14319467 ~ 14320716 (-) True AMCG00015628
TU123859 lncRNA upstream 382323 14458465 ~ 14464160 (-) True G99217
AMCG00015611 mRNA downstream 187349 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015612 mRNA downstream 206556 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015613 mRNA downstream 227617 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015604 mRNA downstream 296609 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015605 mRNA downstream 315104 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015615 mRNA upstream 3352 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015623 mRNA upstream 21283 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015620 mRNA upstream 37852 14113994 ~ 14118650 (-) True AMCG00015620
AMCG00015621 mRNA upstream 46324 14122466 ~ 14128364 (-) True AMCG00015621
AMCG00015624 mRNA upstream 71380 14147522 ~ 14154144 (-) True AMCG00015624
TU123617 other downstream 192601 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 192601 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 192601 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 318220 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 597550 13458127 ~ 13459789 (-) False AMCG00015598
TU123831 other upstream 250025 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 371569 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 405052 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 494509 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 498224 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046063 False 3010 mRNA 0.49 22 NC_007135.7 7596009 ~ 7632187 (-)