RNA id: AMCG00015615


Basic Information

Item Value
RNA id AMCG00015615
length 1002
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00015615
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14079494 ~ 14084022 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatgcGGTGATGCTGCACAGCTTCACTCTGCGGCAGCAGTTGCAGACGACGCGACAGGAGCTCTCCCACGCGCTGTACCAGCATGACGCCGCCTGCCGTGTCATCGCCCGTCTCACCAAGGAGGTCACAGCCGCTCGAGAGGCTCTGGCCACTCTGAAGCCTCAAGCCGGATTGATTGTGCCTCAGGCTGTGCCCTCCTCTCAGCCCACCGCTGCGCTGCAAGACAAGGCTACTGTGCTGACCACCGAGAGAAAGAAGaGAGGGAAGACTGTTCCCGAAGAGTTGGTCAGAGCTGAGGATCTTGGCAAGTACAGACAAGTGGCTTCTCACGCTggTCTGCACAGTGCCAGTATCCCAGGAATCCTTGCTCTTGATCTTTGCCCCACAGACACCAACAAAGTGCTCACAGGTGAAAAACAACTCTcctttctgtatgtgtgtgtttgcgtgcgCATGAGAGAGGTTATCCGTGCTCACGAAGGGGGGGTGACTGGTCTGTCCCTCCACGCCACTGGAGACTACCTGCTAAGCTCCTCTGAGGACCAGtACTGGGCATTCTCTGATATCCAGACTGGACGAGTGCTCACCAAGGTTACTGACGAGACGGCTAGCTGTGCCCTGACCTGCGCCCAGTTCCACCCTGATGGCCTGATCTTTGGCACGGGCACGGCCGACTCTCAGATCAAGATCTGGGACCTGAAGGAGAGGACCAATGTGGCCAACTTCCCCGGCCACAGCGGCCCAGTCACTGCCATCGCCTTCTCTGAGAACGGCTACTACCTGGCCACGGGCGCACAGGACTGCTCTGTCCGGCTGTGGGATCTGCGCAAGCTCAAGAACTTTAAGACCATCACCCTGGACCACGCCTATGagGTTATAATGCTCTACCAGAGTGCAACTAAGAagcACACTGGGCTGGTGACTGGTGTGGCGTTTGGCCAGCACTCCCAGTTCCTCACCTCCTCCGGGATGGATCGCAGCCTCAAGTTCTACAGCCTGTGA

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K10599 PRPF19, PRP19; pre-mRNA-processing factor 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123648 lncRNA downstream 41191 14034258 ~ 14038303 (-) True G99063
TU123642 lncRNA downstream 148372 13925248 ~ 13931122 (-) True G99058
TU123639 lncRNA downstream 161170 13918075 ~ 13918324 (-) True G99055
TU123635 lncRNA downstream 177180 13901356 ~ 13902314 (-) True G99051
TU123633 lncRNA downstream 194824 13883123 ~ 13884670 (-) True G99049
TU123784 lncRNA upstream 6015 14090037 ~ 14091815 (-) True G99165
TU123789 lncRNA upstream 21432 14105454 ~ 14106445 (-) True G99167
TU123834 lncRNA upstream 210946 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA upstream 235445 14319467 ~ 14320716 (-) True AMCG00015628
TU123859 lncRNA upstream 374443 14458465 ~ 14464160 (-) True G99217
AMCG00015614 mRNA downstream 3352 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015611 mRNA downstream 209504 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015612 mRNA downstream 228711 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015613 mRNA downstream 249772 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015604 mRNA downstream 318764 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015623 mRNA upstream 13403 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015620 mRNA upstream 29972 14113994 ~ 14118650 (-) True AMCG00015620
AMCG00015621 mRNA upstream 38444 14122466 ~ 14128364 (-) True AMCG00015621
AMCG00015624 mRNA upstream 63500 14147522 ~ 14154144 (-) True AMCG00015624
AMCG00015622 mRNA upstream 81676 14165698 ~ 14172599 (-) True AMCG00015622
TU123617 other downstream 214756 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 214756 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 214756 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 340375 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 619705 13458127 ~ 13459789 (-) False AMCG00015598
TU123831 other upstream 242145 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 363689 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 397172 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 486629 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 490344 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile