RNA id: AMCG00015621


Basic Information

Item Value
RNA id AMCG00015621
length 728
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00015621
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14122466 ~ 14128364 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctttCTTCAGGATTGATACAGGCACCATGCCCAGCTCTCAGTTTGGGGGTGTCCCAGCTGGCACCTCAAGATTTGATCACTCCTCCTGTTTGGACCCTGAGACTTTAGGGGTGATGACAATATTACTGGGCATCTTCCAGCTGCTCCTTGCCATACCAAGTTACTATGTCGAGCTGTCCCCCCCCTGGCTCCTCATCATGCCCGTCTGCATCGGGATAGTGTTTATTATTGCAGGATCGTTCGCAGTAGCTTGTGAGAAAGTGCCCAATCGCCGGTTGcTACAGGGCTGTGTGTACAGCAATGTGTGTGGCCTGGTGGTGgctctgtgtgcagtgtgtgtgtacgcaGTGGCCCTGCACCGTGTCCCCTCTCCCAAAACCTGCGCCCACTTCGATTTAGACATGCACCTGGAAGATATGGAAATCAACTGCATTTTTGATCACGTGTCGAAGacTACAGCACTCAGTATCGCCACCCTGCTGATGCTGTATAACATTACAGCTCTGATTCTGGTGTCactgctctctttctcttcacTGAGAGAACTAAGGAGCAACCGAAGGACCAACTGACGGATCTGTGTTGTGTAttactctctttctctctgtattaCTATTAACTCTGCTCTGTATTAACAGCCCTCCTGTTAGACTATGTGTCCCGCCATTGTACTGTATCATAGTATTTGGCATGAAAGTAGGTTTTGCAGCATTGCAATAAAGGAAGT

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123789 lncRNA downstream 16021 14105454 ~ 14106445 (-) True G99167
TU123784 lncRNA downstream 30651 14090037 ~ 14091815 (-) True G99165
TU123648 lncRNA downstream 84163 14034258 ~ 14038303 (-) True G99063
TU123642 lncRNA downstream 191344 13925248 ~ 13931122 (-) True G99058
TU123639 lncRNA downstream 204142 13918075 ~ 13918324 (-) True G99055
TU123834 lncRNA upstream 166604 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA upstream 191103 14319467 ~ 14320716 (-) True AMCG00015628
TU123859 lncRNA upstream 330101 14458465 ~ 14464160 (-) True G99217
TU123968 lncRNA upstream 374400 14502764 ~ 14503911 (-) False AMCG00015640
TU123979 lncRNA upstream 410307 14538671 ~ 14603977 (-) True G99296
AMCG00015620 mRNA downstream 3816 14113994 ~ 14118650 (-) True AMCG00015620
AMCG00015623 mRNA downstream 20714 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015615 mRNA downstream 38444 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015614 mRNA downstream 46324 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015611 mRNA downstream 252476 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015624 mRNA upstream 19158 14147522 ~ 14154144 (-) True AMCG00015624
AMCG00015622 mRNA upstream 37334 14165698 ~ 14172599 (-) True AMCG00015622
AMCG00015627 mRNA upstream 128461 14256825 ~ 14273368 (-) True AMCG00015627
AMCG00015628 mRNA upstream 203503 14331867 ~ 14336329 (-) False AMCG00015628
AMCG00015626 mRNA upstream 248391 14376755 ~ 14388739 (-) True AMCG00015626
TU123617 other downstream 257728 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 257728 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 257728 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 383347 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 662677 13458127 ~ 13459789 (-) False AMCG00015598
TU123831 other upstream 197803 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 319347 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 352830 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 442287 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 446002 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile