RNA id: TU123834


Basic Information

Item Value
RNA id TU123834
length 633
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id AMCG00015628
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14294968 ~ 14336329 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgtattaaccttccttcacaaacacacacacacacacacacacacacgcacgcacacgcaacacacacacacacacacacacacacacacacacacacacagacacattcttctctttctctctcccaggAAAGGAACCTgataaaaaggagaaaaataaagcaaaaggCCAACAGAAAGggggaaaaaagaaataagtACAGAAGACCAACGCACAATACCACTTGAAGACTGGAGACAGAGTTGTTCAATATACTTTCTTGAActaaacaattaaatcaaaaaccATTAAGTCAACTCCCATGAATTTTtaccatgaaaagaaaaaaggaaaaagcatcCCAGGGTGTATGTATGTCCTGAATGtatgtttcttattaaaacCTTTCTTTACGCTGGGATTACGTCTTGTCTGGTATTTTCAGAGACGTATCCAGTCACGTGATTAAAACCCATTTCGAATGTGTTTAAACATTACACAGTGCCCTGTCCCACTGATTAGTAATTCAGAATGCAGACTGTGTGTTGTTGGGATGTTAAGTTTAGGTTTACTCTTGCCTCTCAATTATCGTCCAAAGGTCAACTGCAGGTTGTGCAAAGTTAGATATAACACAGTGTACAATATCTGGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123777 lncRNA downstream 76184 14062419 ~ 14218784 (-) True G99162
TU123789 lncRNA downstream 188523 14105454 ~ 14106445 (-) True G99167
TU123784 lncRNA downstream 203153 14090037 ~ 14091815 (-) True G99165
TU123648 lncRNA downstream 256665 14034258 ~ 14038303 (-) True G99063
TU123642 lncRNA downstream 363846 13925248 ~ 13931122 (-) True G99058
TU123859 lncRNA upstream 137749 14458465 ~ 14464160 (-) True G99217
TU123968 lncRNA upstream 182048 14502764 ~ 14503911 (-) False AMCG00015640
TU123979 lncRNA upstream 217955 14538671 ~ 14603977 (-) True G99296
TU123963 lncRNA upstream 222245 14542961 ~ 14611055 (-) False G99289
TU123962 lncRNA upstream 228755 14549471 ~ 14624486 (-) True G99289
AMCG00015627 mRNA downstream 21600 14256825 ~ 14273368 (-) True AMCG00015627
AMCG00015622 mRNA downstream 122369 14165698 ~ 14172599 (-) True AMCG00015622
AMCG00015624 mRNA downstream 140824 14147522 ~ 14154144 (-) True AMCG00015624
AMCG00015621 mRNA downstream 166604 14122466 ~ 14128364 (-) True AMCG00015621
AMCG00015620 mRNA downstream 176318 14113994 ~ 14118650 (-) True AMCG00015620
AMCG00015628 mRNA upstream 11151 14331867 ~ 14336329 (-) False AMCG00015628
AMCG00015626 mRNA upstream 56039 14376755 ~ 14388739 (-) True AMCG00015626
AMCG00015633 mRNA upstream 75049 14395765 ~ 14415538 (-) True AMCG00015633
AMCG00015631 mRNA upstream 100038 14420754 ~ 14433707 (-) True AMCG00015631
AMCG00015634 mRNA upstream 115762 14436478 ~ 14444158 (-) True AMCG00015634
TU123617 other downstream 430230 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 430230 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 430230 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 555849 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 835179 13458127 ~ 13459789 (-) False AMCG00015598
TU123831 other upstream 5451 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 126995 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 160478 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 249935 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 253650 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile