RNA id: AMCG00015633


Basic Information

Item Value
RNA id AMCG00015633
length 4800
RNA type mRNA
GC content 0.61
exon number 21
gene id AMCG00015633
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14395765 ~ 14415538 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacgAGTTGAAAATggcggagggagagagagagcacactaACTTTATCGCCTAATAACAGCGAGAAAGGCAAATACCTGGTCCGTGATACACCCGCACGGTGTCAAACTGTACCGGTGAACTCATAACGCTGCCCGGGCCGCCCTCACGGAGCTCGTCGGCCGCACGGCCGCCGGCGATAGACCGAACCGATCGCACAAAGTTGCGGAGGAATCGCTGCCGTCGGATCTTAAACTTGGACGGGCGAACAATTCTGCCCAGCGTCTCCGCCTCGCCGTGCGGACGCCCGGGCTGCTGTGGACGGGAGCCGCGCCGGTTACGAGCCGAAAGAGGACGCTCAGCTTCGCCAAGGACGGAAATAAACCCCCAAAATAAaccagcaaaacaacaacagcagcagcagcagcagcagcagccggaGATCAAGACCCAAGAGCTGCAGCCCAGGACTTCCTAACTCGCGTCTCTCCATGTCTGTACAGATGTATATAGTGGCTCCACGTAGTCCGGCTGCACACGGGGGGAACCATCCTTACATCCAGTTCTgtctataaaaatacattgcttttcttaataattgtgAGGTTTGTTTTCCCTACACAATGTAGCTATTTGTACCAAATCCGCGACCCGGAGTTTCAGATGTGTGCGCGTCCGTGGGTGTAGATAGACGCGCTGCTGTGACACGGCTGCCTTTTTCTGCTTCGCGTTACAAGTTGTGCAGTTCATTTCCTTCATTGAAATCGCTCAGACTTTAAATCCAAggccattacaaaaaaaaaaaaagacaatttaaatCTATATACAGGAAATAATTGGGAGATCCCTTTGGGATACAATGGAGGAGTCGAGACTGCGTTATAGTAAGAGACTGcgtTCCGGCACACGCAGGCGCTACCAGGATGACGGGATTTCGGACGACGAGATCGAGGGGAAGAGGACCTTTGACCTGGAGGACAAGCTCAGGAGTGACCGCTATGGGGCCTCATTGGTCAAATGCATGGAGGGCAAAGACTTCACCTATGAGTACATACAGAGGGAAGGCCTGAGGGATCCGCTGATCTTCGAGAAACCCGATGGCCTGGGCATCAAGGTGGTGGATGTGATGGACGTGACGACGCAGCGGGGCATCGAGATGTCGATGGCGCAGTGGAGGCGCTACTACGAGACGCCGCCCAGCCAGAGGGAGAAGCTGTACAATGTCATCAGCCTAGAGTTCAGCCACACCAAGCTGGAGAACCTGGTCCAGCGGCCAGCATCGgttgACAAGATTGACTGGGTTGATAACATGTGGCCTCGCCATctgaaggagagacagagagactccACTAACGCCATCATAGATATGCAATACCCCAAAGTGCAGAAGTATTGTCTGATGAGTGTCCAGGGATGCTACACAGATTTCCACATTGATTTCGGAGGCACTTCAGTCTGGTACCACATTTTGAGAGGAGGGAAGGGTGACATCTTCCTGGGAGACAAGGCCAGCGACTGCCAGAGGATCGAGCTCAAGCAGGGCTACACCTTCATGATCCCCTCTGGCTGGATCCATGCGGTGTACACCCCTGTGGACACTCTGGTGTTTGGAGGCAACTTCCTGCACAGCTTCAACATCCCCATGCAGCTGCACATCTACAACATCGAGGACCGTACCCGAGTGCCATCGAAGTTCCGGTACCCTTTCTACTATGAGATGTGCTGGTATgaggaggaggaagaggaggaagagggggaaggtcacgagggggagggggagcaggaAGAGGCAGAGTCGTCCTCCCCCGCCCCCTCTCCTTCGATTCCAGGTGTCAAAGTTCACCTCACGCCCTTCGAAATTGAAGGACTCAGGAACCTGCTGGGCAAACTGGAGTCCCTGCCCTCTCACAAGAAGTGCacTCTGCTGCAGGAGCATGCCAATGACAACCCCATGCTGTCCTACACAGGAGTGCCCATCGTCAAGTGGCCAAAGAGGCCCTCCTGGTACCGgccctgcccccctccccccctgtCGGTGGGCCGCTCCCGGTTTTACCCTTCGTGCCCAGCACCTCCCCGCCCCACCCGGCCCACCTCTGTTTCGGCGCTGCGCAGGCGGAGGGTGCGGTGCAAGCGCTGCACCGCCTGTCTGCGCCGGGAGTGCGGCGCCTGCAACTTCTGCAGAGATATGAAGAAGTTCGGAGGCCCGGGGAGGCTGAAACAGACCTGTGTGCTGCGCCAGTGTCTTGCTccggGCCTGCCCCTGTCTGCGGTGTGTGAGGTGTGTGGCGAGGGCACTCAGGACCCCGGAGAGACGCCGGTGTTCTCGTTCACCCTAATGGAGTGCACAGCCTGCGGACAGATTGCTCACCCCGACTGCATCAAGGTGGCTGGAGAGGGTGTGGTGAATAAAGACCTGCCCAGCTGCTGGGAGTGTCCCAAGTGTACCATGGGCACCCACACTGAGTCCTCTGCCAGTGATGATGACAGTGTGGCCTCCGCCGGCTCCCTCTCCCCGGCTGCACCCCCCGCAGAGAAACGCTCtctgagggagggggtgggggggggaggaggcGGTGAGGGTGATGAGGGTGGTggtgaagggggggggggccGGGCCAGCCGTCACAGCGGTAAACCCCCCCTCCCGCTCTCTGCCCTGCCCCTCTCCCGCCGCCAgccctctgcctcctccctaAGTCAGCGGCCACGCAGGGTGGCGCCCTCCCCCTCACACAGGCTGCtactgcagcagcaacagcagcgaAAGAGAGCCGGGGCCCTGGAGCTCAAGCTCAGGAAGAGGaTTAAATTGGAGCGGGATAAGATTTTGCAATCCaaGAGAAAGTCCTCTCCGGACCCGCGAGCCAAGCTCCTCCGACCCCTTCGCCGTCGCCGAGGGGTCGACCAGGACCACAGTGAAGACGGAGACTCTAAGACCGGGGACGGCCCTCAGACCCGCTccaactcctcctcctctgcctcctcttcgtcttcctcctcgtcctcctcctcccgcctctccccctcccctgaCGCCCGACACCAAGGGATTAGGAGGCGGGGCTCCTGGGGAGTAGGAGGTGGGGCCAGAGGGCCAGGCAGACGGGGGGCATGTTCTGACTCCAACGCCGCGCTGGTCTCCCGCAGGAACCAAATGAGCGGCCGAGTGAGGAGGGGGgtgaagagagaaggagagagggaggaggagacgAGCCAGAGAGGAGTGCGGTTCCGAAGGAAGCAGCAGGGGAAGACGGGCCGGAGGGGACGGGCAAGggatgaagaagaagaggaggaggaggaggatgaggaggacaGCGaaatggaagaagaagaagaggaggaggaggaggaggaagaagagagggaGCGGAGGGGCGGAAAAGAGAACCGGCCTCACAAAGGAGAGCGATTCCACGACGACGACAACCAGGAAGAAGGtatggaggaagaggaggacggaggaggagatgaagaccAGTCGGACTCCGATCCTGACCCCCCAGTCCTGCTGGTGTCAGACCTGAGCGATGACCCACTGCTCAACGGCTCCTACCTGACGGTGACCCTGCAGCGACCCACCCGCTCCAGGCGAGACCCAGGCTCCATCGTGCCCAAGCTGGAGGCTGTGGCCCCTAGGAGAGGGGGAGGCGGTGCAGGAATGGGAGGGGCCTCTTCCCAGGCTTACATCCAGAGGAAGACCCTGCACAGGCCCAGAACCCAGCCtgggagaggggcagggggcaggggggaggAGATGGCAGGGAGGAGAAACTCGAACTCGCACTCTAATTCcaactcccactcccactcccactcggACCTGGGCATCTCCGAGGCCAGGGTGCTGGTGTCTCGGCTGGACGagggcagaggagagagagggtcgGGGGGGGACTCCCGCTCGCTCTCTCGCCcgcccccttcctctctcccccatcAACGCCACAACAATAGCAGCAGCCACCACcaccgccaccaccaccacacctCGTCCTCCTCGCCCTCGCCCACCCCACAgccctcgctctctccctcgGCTGCCAACGTTGGTGGGCAGTCCTCCCGGTCTTCCCCCAACCCCTCTCtcctgccctcctcctcctctgcctccttcCTGCCGTGGGATGGAGGGAACGAGCAGGGCTGTGAGAAGGAGGTGTGGGTGGCGGTGTTCCGGTACCTGACCCGGGCCGAGCTGTGTGTCTGCATGAGCGTCTGCAAGAGCTGGTACAGATGGAGCTGTGACAAGCGCCTGTGGACGAGGATTGACCTGAGCCGCTGTCGCTCAGTCAGCCCGCAGGCCCTGTCTGGCATCATCAAGAGACAGCCTGTCTCCCTCGACCTCAGCTGGACCAGCATCTCCAAGAAGCAGCTCACCTGGCTGATCAACAGGCTGCCTGGGCTGAAGGACCTCATGCTGTCTGGCTGCTCGTGGTCGTCCGTGTCGGCCCTGAGCTCGGCCAGCTGCCCCCTGCTGCGCACGCTGGACCTGCGCTGGGCCCAGGGAGTCAGAGACACGCAGATCAGAGACCTGCTCACTCCCCCTGGCTGTGACAACCGTAGTAAGCTGAGGAACGTGGTGTCGTTCCGGCTGGCGGGGCTAGAGGTGACGGACGCCACGCTGAGGCTGCTGCTGCGCCACACGCCCCTGCTGGCCCGCCTGGACCTGGGCCACTGCCGCCTGCTGACCGACCACTCCGTCAACCTGCTCACCGCCGGGGTCACCCGGCGCGCCTGTGAGAGCTTCATCTCCGAGCTGTCGGTCAACGCACTGTACTGCCTGTCAGAGGACAAACTTATACAGAGGATCAgctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123834 lncRNA downstream 75049 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA downstream 75049 14319467 ~ 14320716 (-) True AMCG00015628
TU123777 lncRNA downstream 176981 14062419 ~ 14218784 (-) True G99162
TU123859 lncRNA upstream 42927 14458465 ~ 14464160 (-) True G99217
TU123968 lncRNA upstream 87226 14502764 ~ 14503911 (-) False AMCG00015640
TU123979 lncRNA upstream 123133 14538671 ~ 14603977 (-) True G99296
TU123963 lncRNA upstream 127423 14542961 ~ 14611055 (-) False G99289
TU123962 lncRNA upstream 133933 14549471 ~ 14624486 (-) True G99289
AMCG00015626 mRNA downstream 7026 14376755 ~ 14388739 (-) True AMCG00015626
AMCG00015628 mRNA downstream 59436 14331867 ~ 14336329 (-) False AMCG00015628
AMCG00015627 mRNA downstream 122397 14256825 ~ 14273368 (-) True AMCG00015627
AMCG00015622 mRNA downstream 223166 14165698 ~ 14172599 (-) True AMCG00015622
AMCG00015624 mRNA downstream 241621 14147522 ~ 14154144 (-) True AMCG00015624
AMCG00015631 mRNA upstream 5216 14420754 ~ 14433707 (-) True AMCG00015631
AMCG00015634 mRNA upstream 20940 14436478 ~ 14444158 (-) True AMCG00015634
AMCG00015632 mRNA upstream 29815 14445353 ~ 14446018 (-) True AMCG00015632
AMCG00015635 mRNA upstream 52823 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015640 mRNA upstream 87966 14503504 ~ 14515279 (-) True AMCG00015640
TU123831 other downstream 60833 14326167 ~ 14334932 (-) False AMCG00015628
TU123617 other downstream 531027 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 531027 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 531027 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 656646 13671315 ~ 13739119 (-) True AMCG00015606
TU123851 other upstream 32173 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 65656 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 155113 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 158828 14574366 ~ 14577633 (-) False AMCG00015642
TU124012 other upstream 274849 14690387 ~ 14738274 (-) False AMCG00015645

Expression Profile