RNA id: AMCG00015634


Basic Information

Item Value
RNA id AMCG00015634
length 798
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00015634
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14436478 ~ 14444158 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCACGGGAAAGGCGGCGCTCGGAGCGGATGAAGCCGTCACGCAGGCCGCCATTTGCTCCTTTTTTCCCTCGGTTCGTCTGTCGCCGGCTCAGTGTGCCATCATCATGTTTGACGTGACGTCGCGGGTGACCTACAAGAATGTGCCCAACTGGCACCGAGACCTGGTGCGCGTGTGCGAGAACATCCCCATCGTGCTCTGCGGCAACAAGGTGGACATCAAGGACAGGAAGGTCAAGGCCAAGAGCATTGTCTTCCACCGCAAGAAGAACCTGCAGtacTATGACATTTCGGCCAAGAGTAACTATAACTTTGAGAAGCCGTTCCTGTGGCTGGCCCGGAAGTTAATCGGTGACCCCAACCTGGAGTTTGTTGCCATGCCAGCGCTCGCCCCCCCCGAGGTCTCTATGGACCCCTCCCTCGCTGCCCAGTACGAGCACGACCTCAAGGTGGCGTCAGAAACAGCACTACCAGATGAAGATGATGACCTTTAACCTGTGACCTCCCCTGGGGGCTGGTGGGagggggggcactgctgttgacCTTACACCTTTACTGTAAAACCTGatctcagattattttttttaactattttatttttttcattttgaacaaTGGACATCCTGTAATACTTGTACtgtccagtacagtacagaaacacacagtgcagtaaaaaCCCAGTACagacatacagtacagtgcagtacagactCGCACtcagaatgatttaaaaaaaaaaaaagcacttatttgacaaaaaacagaacatcttTGAATAAAAACTATCTGAATTTAGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123834 lncRNA downstream 115762 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA downstream 115762 14319467 ~ 14320716 (-) True AMCG00015628
TU123777 lncRNA downstream 217694 14062419 ~ 14218784 (-) True G99162
TU123859 lncRNA upstream 14307 14458465 ~ 14464160 (-) True G99217
TU123968 lncRNA upstream 58606 14502764 ~ 14503911 (-) False AMCG00015640
TU123979 lncRNA upstream 94513 14538671 ~ 14603977 (-) True G99296
TU123963 lncRNA upstream 98803 14542961 ~ 14611055 (-) False G99289
TU123962 lncRNA upstream 105313 14549471 ~ 14624486 (-) True G99289
AMCG00015631 mRNA downstream 2771 14420754 ~ 14433707 (-) True AMCG00015631
AMCG00015633 mRNA downstream 20940 14395765 ~ 14415538 (-) True AMCG00015633
AMCG00015626 mRNA downstream 47739 14376755 ~ 14388739 (-) True AMCG00015626
AMCG00015628 mRNA downstream 100149 14331867 ~ 14336329 (-) False AMCG00015628
AMCG00015627 mRNA downstream 163110 14256825 ~ 14273368 (-) True AMCG00015627
AMCG00015632 mRNA upstream 1195 14445353 ~ 14446018 (-) True AMCG00015632
AMCG00015635 mRNA upstream 24203 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015640 mRNA upstream 59346 14503504 ~ 14515279 (-) True AMCG00015640
AMCG00015641 mRNA upstream 73300 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015642 mRNA upstream 127820 14571978 ~ 14575815 (-) False AMCG00015642
TU123831 other downstream 101546 14326167 ~ 14334932 (-) False AMCG00015628
TU123617 other downstream 571740 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 571740 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 571740 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 697359 13671315 ~ 13739119 (-) True AMCG00015606
TU123851 other upstream 3553 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 37036 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 126493 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 130208 14574366 ~ 14577633 (-) False AMCG00015642
TU124012 other upstream 246229 14690387 ~ 14738274 (-) False AMCG00015645

Expression Profile