RNA id: TU123968


Basic Information

Item Value
RNA id TU123968
length 1070
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00015640
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14502764 ~ 14515279 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttaaattgaactcaGGTTTATTGATTTCGTCTTTGTTTCCAAAAATTCAAAAGATTTGTTTCCGTCaccaacatttcatttttggacTGAAAATAAGAACAGTAACATTAATAAGAATCGTAATCAgcattttcatcatcatcatcatcatcattgcagtaataataatggtacAAAATGTATCCCTTCATCAattcaataacaaaaaaggacaataataacaataataatgccatttagttttttgcttcTATGGTTTTAATGAAGAACTGAATGAACTGTACAGAATGTGTGataggagagaaagagggagagggacacacCACCCTCTTCTCCTCCACTactccccctttccctccctcttctcTACAGCACTCCTGCTCTCATCTAAATTCTAAGCTTCATCACTTCTCCTCTCAATCTACTCTAGAGAAAGATCTGCACTTAGTCCCCATAAtactattaaataataattgtaataaaaagtTGTGCAATTTAAAAGACCGTTGTGATGTACAATTATATTCAGTGTCTcgaatgcaaaacaaaataaaaccataacaataagaatgataatgataataattaatacccaaataataaatacatatttggaaTGTGGTGCTCAAATATAACCTATAGGTGGCGCTGAGGAATCAATCGTGAAAGTGTAATGGGCAATCTACCTTCCCCGTCCCCAGTtctcccccctctctgtgtgagagagagagagaggcagcgaGAGGACAGAGTAGACGGTCCCTTCCTCTGTGTTAATGTACTGtggtgtgtgtactgtattaaccccccccccccaagatgtgttaatgtactgtagtgtgcagTCAGTGTCTGTACTCTATTACCCCCCCATGTGTGTAGTGTAATAGTCTCTATTCAGTCTCTTCCATCTCtttccccttcctctcctctccctcctcccctctgTCCCAGTCAAATGCTCCACCTTGTAACActcatctctccctctatctctctcctcctctccccaccTTTCAACCTCTTGTAAACCCCTCCACCCCATCCCTCGGTTCCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123859 lncRNA downstream 38604 14458465 ~ 14464160 (-) True G99217
TU123834 lncRNA downstream 182048 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA downstream 182048 14319467 ~ 14320716 (-) True AMCG00015628
TU123777 lncRNA downstream 283980 14062419 ~ 14218784 (-) True G99162
TU123979 lncRNA upstream 34760 14538671 ~ 14603977 (-) True G99296
TU123963 lncRNA upstream 39050 14542961 ~ 14611055 (-) False G99289
TU123962 lncRNA upstream 45560 14549471 ~ 14624486 (-) True G99289
TU123988 lncRNA upstream 58267 14562178 ~ 14563226 (-) True G99302
TU124033 lncRNA upstream 274519 14778430 ~ 14782267 (-) True AMCG00015647
AMCG00015635 mRNA downstream 28662 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015632 mRNA downstream 56746 14445353 ~ 14446018 (-) True AMCG00015632
AMCG00015634 mRNA downstream 58606 14436478 ~ 14444158 (-) True AMCG00015634
AMCG00015631 mRNA downstream 69057 14420754 ~ 14433707 (-) True AMCG00015631
AMCG00015633 mRNA downstream 87226 14395765 ~ 14415538 (-) True AMCG00015633
AMCG00015641 mRNA upstream 13547 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015642 mRNA upstream 68067 14571978 ~ 14575815 (-) False AMCG00015642
AMCG00015644 mRNA upstream 168300 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015645 mRNA upstream 176883 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015647 mRNA upstream 276358 14780269 ~ 14795425 (-) False AMCG00015647
TU123958 other downstream 19856 14481194 ~ 14482908 (-) True G99286
TU123851 other downstream 46069 14447711 ~ 14456695 (-) True G99213
TU123831 other downstream 167832 14326167 ~ 14334932 (-) False AMCG00015628
TU123617 other downstream 638026 13841229 ~ 13864738 (-) False AMCG00015612
TU123992 other upstream 66740 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 70455 14574366 ~ 14577633 (-) False AMCG00015642
TU124012 other upstream 186476 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other upstream 186959 14690870 ~ 14695370 (-) True AMCG00015645
TU124167 other upstream 598706 15102617 ~ 15189394 (-) True G99426

Expression Profile