RNA id: TU123992


Basic Information

Item Value
RNA id TU123992
length 1781
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00015642
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14570651 ~ 14577633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccccccccccccctctctctctctctctctctctctctctctctctctctcaggagtggGATTTGAAGGCGGAGGAGGCGAAGAGAGCGTATGAGAAGGCGATGAAGGAGTACAGAGAAAGCGGCGGGGCACCAGCCCCAAGCAAGAAggAGGCAAAGAAGAAGGGGAAGGGGGCAggagaagagaagaagaagaaggtcGGGGGCCGGGGCGGGGCGGCAGAGCGCGAGAAGGAGCgggagagagagcgcgagaAGGAGCGGGAGAAGGGCGGAGACAGCTTCAAGAGCCGCGAGTTCATCTCCAGCGACGAGAGCTCCGAGTCTGACTCCGCCCGGGACCgcaagggcaagggcaagggcaagggcaagggcaagAGCAAGgaatccgatgaagaggaagaggagataGCGAGTACCCCCCCCAGCTCGGAGGAGTCGGGATCAGACTGAGGCCAAGCTCGTTAACCAGTTAACTGCACTGATTGACTAACGAGGGAGGGGAGTAGGGGCTGGGGGAGTGTGACtatggacacagagagagacgagacaaaaacatttacagaccgggaagtggagagagacagacccaTTCATTCAGACTGCCACACACAGTAAATGTGTCTGCATTTCTCCAAAGTATGAAAACTGAGTCATCCTCCCAAAGACTCAAtgcatttcctctctctctgtctatatgtatatattatttgtgcttAAAATACTATTCAGTATCATCTGTACCCCAGTTTGACTTGTCCTATAAATTTGAATATTTCCAAGTTGTTAAACAAGGTGTACATTTCATGCTTTTTTCTTAGATACAGTGTGTGTTAGCCTGTTACATGTAGAGAATTCAGGAAGGGAAGGTGGGAGGCAGATCACACactcataattatttttttttatggatttttttttttgcaatgtagTCTTGTGAGCTACATCTCCAATGATCCTTAATAAGATCAGAAGTTTTTATTGCAGGTGGGTCCAGGATCCCAAAGCATTGTGGGATGTTTCATTCCTGAGCTCTTCAATCCAGGCAGAATggttgtaattaattaaatttccCATGATGCCATGCGCTTTCACTATAGTCCTTTATTTGCCGTGTCTATAGACCACACCCATCTCCGTCAAGCCTTTGCTGCCTCATGCATCCTGATACTGGGCAATGGTGGTTGTTCCCAGGGTGCACTGGGAACTAGTCTTTCAAACCCCCAAGGATTATTGTTCACATCTGTCAGTAGACCAACTGTCTCTTTCTGTGGGAAAAGACTCTGTTTGGCACTTTGAATTGATGCAGGTTATTTTATATTCCTTATTGTGGTAGTAATTATTTCTAGTTTCTACAAGGTGTTAGTTTATATCTCAACTCCTCTTTTCCTCCTGTTCTCATCCCTCCCCTATTGCCTGTGTTTATGAGGGAGGGATTCTGAGCTTTTTCCTGATCTTTTCCacatccccctccccctctctctgcatctcCTTACTGTACTTATTTGCAGAGACCTACTAAGAGAGAGCAGACCCCCTCAGTAATAAACACCCAAggacgggacaggacaggacaggacaggacaggacagagagagagagagatacagggAGTAGAGGAAAGGTAGATttttacagacagacagctaTCTAGCTAAGAAGCAGTGGCCAGGTTCTGTAGTTGCCGTTGTGAGTGTGCTTGTGTTGTCTTCTCGTGCGACATGTTTGAATGGTCAGTGTGTACACCAGACCAATGCAGTAACTGACACAATAAACCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123988 lncRNA downstream 7425 14562178 ~ 14563226 (-) True G99302
TU123968 lncRNA downstream 66740 14502764 ~ 14503911 (-) False AMCG00015640
TU123859 lncRNA downstream 106491 14458465 ~ 14464160 (-) True G99217
TU123834 lncRNA downstream 249935 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA downstream 249935 14319467 ~ 14320716 (-) True AMCG00015628
TU124033 lncRNA upstream 205341 14778430 ~ 14782267 (-) True AMCG00015647
TU124037 lncRNA upstream 215830 14788919 ~ 14789198 (-) True G99332
TU124051 lncRNA upstream 267547 14840636 ~ 14840842 (-) True G99341
TU124053 lncRNA upstream 306671 14879760 ~ 14880075 (-) True G99343
TU124114 lncRNA upstream 307565 14880654 ~ 14881619 (-) True G99390
AMCG00015641 mRNA downstream 50365 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015640 mRNA downstream 55372 14503504 ~ 14515279 (-) True AMCG00015640
AMCG00015635 mRNA downstream 96549 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015632 mRNA downstream 124633 14445353 ~ 14446018 (-) True AMCG00015632
AMCG00015634 mRNA downstream 126493 14436478 ~ 14444158 (-) True AMCG00015634
AMCG00015644 mRNA upstream 99122 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015645 mRNA upstream 107705 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015647 mRNA upstream 207180 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015649 mRNA upstream 348223 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015651 mRNA upstream 366957 14940046 ~ 14943540 (-) True AMCG00015651
TU123958 other downstream 87743 14481194 ~ 14482908 (-) True G99286
TU123851 other downstream 113956 14447711 ~ 14456695 (-) True G99213
TU123831 other downstream 235719 14326167 ~ 14334932 (-) False AMCG00015628
TU123617 other downstream 705913 13841229 ~ 13864738 (-) False AMCG00015612
TU123993 other upstream 1277 14574366 ~ 14577633 (-) False AMCG00015642
TU124012 other upstream 117298 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other upstream 117781 14690870 ~ 14695370 (-) True AMCG00015645
TU124167 other upstream 529528 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 597526 15170615 ~ 15171672 (-) False AMCG00015659

Expression Profile