RNA id: TU123993


Basic Information

Item Value
RNA id TU123993
length 1414
RNA type TUCP
GC content 0.49
exon number 6
gene id AMCG00015642
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14570651 ~ 14577633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagaagCAGACAAACTCAGATACTcagtgacagagagaaagacgACTAAATAGTCAGACTGAGAGAGACGCTCACTTTCAgaaagacaggcaggcagacacacacacttgcacataCTCTTGTGCCCAAACACAGATACATAATTAACGAGGGAGGGCAATTACTGTGGAGATTCCAGGAAGCTCCGGGGCCCGCGTCAGTCCCAACTCAACGAGGGCAACCCGCACGTGTGAGCGAggagtggggagggggaggagaggaggatcCTGAAAGCAAATGTATTAGTAGTCatcattatgatgatgatgattatgaatGATAATGGTAGAATTCATTATATGATTAGTAGTAAGTGGTCTTAGTAGTCGTGGTGGTAAATAGTTGTAGTAGTAGGTCGTATTAAATAGTGATAGATTGCTAAAGTGAGAGCAGGCAGGggtgggagacagagagactgagggaggagagagagggagagatgggggtGGATATAGGGAGGGGCAGGGCGAAGGGTGTGGTGTTAGAGAGGATGggttaaagagagagaaaggaaaacgGACCGAGAAAGACATTCTCCTGGACCAGAAGACTGATACACAGTGCAGAGGTGATGCAAACTGGGACTCAGACTGACTGAGAAGAGCCCACTGTGTCTTCAATTACTGCAGCCAGATccggagaaagagggagagagagaaacaggaagcGCAATACATAGAGAtcgagagagagacacacacacacagtaaatcaGATTAAACACACTGGGAGAGAcaacacctctctctctctctctctctctctctctttctctctcacacacacacacacacaaccccttCTGATCACACTGTAGTCCTCCCTCATACTCGCACACAGACACGTACTCACCGACGCATACATTCACTCACACTGAAGATGATGAACTGCATCACAGACTTTTTCACCTATGAGACGACCAAGTCTGTGGTGGTGAAGAGCTGGACCATCGGCATCATCAACAGAGTGGTGCAGCTTCTGATCATCACCTACTTCATAGGCTGGGTGTTCTACCATGAGAAGGCCTATCAGGTGAGAGACACAGCCATCGAGTCGTCAGTAATGACCAAGGTCAAGGGCTTCGGGGTCTACAACGGCAAGGTCATGGACGTGGCCGACTACGTCATCCCCACACAGGGCGCCTCAGTGTTCTGCATCATCACCAAGCTGATCACCACTGAGAACCAGATGCAGGGATATTGTCCTGAGaCTGAGCCAAAGTTTGGCTGTAAGGATGACAGTGACTGCACTCACTGGATGCAAAATACTGGGGGGAAcgGTATGAAAACAGGTCGATGTGTCGGCTTTAACAGCTCCTATAGGACCTGTGAGATCAGAGGCTGGTGCCCAGCAGAGATTGACACCATAAAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123988 lncRNA downstream 11140 14562178 ~ 14563226 (-) True G99302
TU123968 lncRNA downstream 70455 14502764 ~ 14503911 (-) False AMCG00015640
TU123859 lncRNA downstream 110206 14458465 ~ 14464160 (-) True G99217
TU123834 lncRNA downstream 253650 14294968 ~ 14320716 (-) False AMCG00015628
TU124033 lncRNA upstream 200797 14778430 ~ 14782267 (-) True AMCG00015647
TU124037 lncRNA upstream 211286 14788919 ~ 14789198 (-) True G99332
TU124051 lncRNA upstream 263003 14840636 ~ 14840842 (-) True G99341
TU124053 lncRNA upstream 302127 14879760 ~ 14880075 (-) True G99343
TU124114 lncRNA upstream 303021 14880654 ~ 14881619 (-) True G99390
AMCG00015641 mRNA downstream 54080 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015640 mRNA downstream 59087 14503504 ~ 14515279 (-) True AMCG00015640
AMCG00015635 mRNA downstream 100264 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015632 mRNA downstream 128348 14445353 ~ 14446018 (-) True AMCG00015632
AMCG00015634 mRNA downstream 130208 14436478 ~ 14444158 (-) True AMCG00015634
AMCG00015644 mRNA upstream 94578 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015645 mRNA upstream 103161 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015647 mRNA upstream 202636 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015649 mRNA upstream 343679 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015651 mRNA upstream 362413 14940046 ~ 14943540 (-) True AMCG00015651
TU123992 other downstream 1277 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 91458 14481194 ~ 14482908 (-) True G99286
TU123851 other downstream 117671 14447711 ~ 14456695 (-) True G99213
TU123831 other downstream 239434 14326167 ~ 14334932 (-) False AMCG00015628
TU123618 other downstream 709628 13841229 ~ 13864738 (-) True AMCG00015612
TU124012 other upstream 112754 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other upstream 113237 14690870 ~ 14695370 (-) True AMCG00015645
TU124167 other upstream 524984 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 592982 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 681828 15259461 ~ 15260484 (-) True G99454

Expression Profile