RNA id: AMCG00015644


Basic Information

Item Value
RNA id AMCG00015644
length 2113
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00015644
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14672211 ~ 14675992 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAGATTAGATTTCATTTCTCTGCTGGCCGCCTCCCCAGGAGCCCAAATGGCGTCCGGTCGCGCCGTCCCGCCTGTCGTGTTGTCATTGGCCGGCTGTGGGAACAGCAGCagacagagggggagggagagccGTGTTGTTACGGGTGCACGGCGGGGTGCTGTGGCGACCATGAAAACCAGGAGGAGCGGGATGGCAAGCAGGGCTGAGCCGCCAGCTGCGCCAGTGGAAACCGCACAGAAACACGTGGGAACAGGGACAACCTCCGCAAAGCTGCCCAGAGCAGTGCAAACCAGGACCAGATCAGCAGCCGCAACTGCTGCGGAAACTGCAGGACAGCCACCGGAAAGCAGggccactcctcctcctcctgctgctgctgctgctgctgctgctgctgctgtggagaCCAGCACCAGAGCCCCACATGCTGCTGTGGAGACAACTGAGACAGAACCCAGCAAGATTGCCCAGGAGACCACCAACAGTGAAGCATCCTCTGCTGCCATGGAGACTGCCCAGAGCGGAGCATCGCCTGTTGCTTTGGAATCCACGAGCGCTACAGCATTGCAAACATCCAAAGGGCAACACAACACTACAACACTAACACTGATCCCAGCCCCTGTCCCCATTCTCCCACCGCTCCCTCCACGCTCCTCTCCCCCTGGGCCTTCCCACCCTCCCTTTCCCAGCGGCCGGCCCTGGGAGAGCTGGGAGGTGCGTGCTCTGCTCGGCCTGTGGGGGGCGCCGGAGATGCAGGAGAGGCTGCGCACGTCCCTCAGGAATCACGGCATCTACAAGTCCATTTCAGAGGGGCTAGTGGCCAAGGGGGTGTGGCGCAGTGCGGAGCAGTGCAGGGACAAGGCCAAGAAACTGAAAGACCGGTATCGCAAACACAGGGCTGctctggagaaaacaaaagaaaaggggaaGAAAAGGTTCAAGTTTTTTCGTTCTCTGGAAGCCATTCTGGGTGGTGGAGAGATGGAGAgtagaagaggaggagaggagagagagagggagatggaccAGTCTGACTCATCCGACACTGGAGAGCTGGAGcgagagatggaaagagaggTGCAGGAGGAGGAATTGGAGGACATGGCTCCTCTATCTAAGCGGCAGAGAAGGGGGTGCAGGGGCAAGCGTGGGGGAAGGAGGAGAGGGTGCCACGACAGCGCAGACTATGGAGGAGACGAGGAAGAGGGAGGGCATGAAGGGGTGCTGATGCGTTTCCTGCGGGAGAGTGACGCCCACTTCCTGCAGCTCCAGTCAGACTTCCTGTccatggagagagaggagagggaagcgGACCGGCGGGCATGGGAGGAGGGACAGAGTGGGGTCAGCCACGCTTTGCTTCAGCTCACACAGGCCTTCACACGCCaagcacatgcacatgcacacacgcatgGAGAAGAAGAGCGAGGGGGACACATACGtgaagagggagaggcagagatatGGAGAGGGGGACAGGTAGAGGGACTGAGGCAGGAAGAGGGAGGGggacagacagatggagaggGACACATGAATGCAGACCAAGAGGGAGGTGGACTAAGATGGACAGCAGGGGAGGGAGGCAACACGGGAGATGGCGAGGGACAGATAGAGGGATGCAGCTATACACTGGGTGTATCCAGAGAGACACAATCcctacacaacaacacacagtcTGTGCACAAAGAGACgcaaacagcaacacaaagcCAAGCAAGGAGAGAACACAAGGAGACACAGACACCACTGCACAGCCACACTTGGAATGATCACTCTTACACATAAGACACTGTGTCACTACACATCTCTCACAGGATGCAGAAACTGAACCTCACAGGAAGTACAGTACTGACAGACATCACAGAGAGAGTGACTAGATATAGTAAAACCTAACACAGAGAAAGCGGGAGGGGGAGATGGACTGCAATATGTCTTGGAAATACAcctaacagagagagagagagagagatgagataCTGAAAAAGGCACACctaacacacagagagacagaaagggacCCAAAAATCACCATAAGCCTTTGAATGTTTGTGTCTATTTACTTACCTCATATTGTGGTATTTTAACAGACTTTATTAAACCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123962 lncRNA downstream 47725 14549471 ~ 14624486 (-) True G99289
TU123963 lncRNA downstream 61156 14542961 ~ 14611055 (-) False G99289
TU123979 lncRNA downstream 68234 14538671 ~ 14603977 (-) True G99296
TU123988 lncRNA downstream 108985 14562178 ~ 14563226 (-) True G99302
TU123968 lncRNA downstream 168300 14502764 ~ 14503911 (-) False AMCG00015640
TU124033 lncRNA upstream 102438 14778430 ~ 14782267 (-) True AMCG00015647
TU124037 lncRNA upstream 112927 14788919 ~ 14789198 (-) True G99332
TU124051 lncRNA upstream 164644 14840636 ~ 14840842 (-) True G99341
TU124053 lncRNA upstream 203768 14879760 ~ 14880075 (-) True G99343
TU124114 lncRNA upstream 204662 14880654 ~ 14881619 (-) True G99390
AMCG00015642 mRNA downstream 96396 14571978 ~ 14575815 (-) False AMCG00015642
AMCG00015641 mRNA downstream 151925 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015640 mRNA downstream 156932 14503504 ~ 14515279 (-) True AMCG00015640
AMCG00015635 mRNA downstream 198109 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015632 mRNA downstream 226193 14445353 ~ 14446018 (-) True AMCG00015632
AMCG00015645 mRNA upstream 4802 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015647 mRNA upstream 104277 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015649 mRNA upstream 245320 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015651 mRNA upstream 264054 14940046 ~ 14943540 (-) True AMCG00015651
AMCG00015652 mRNA upstream 273251 14949243 ~ 14955830 (-) True AMCG00015652
TU123993 other downstream 94578 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 99122 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 189303 14481194 ~ 14482908 (-) True G99286
TU123851 other downstream 215516 14447711 ~ 14456695 (-) True G99213
TU123831 other downstream 337279 14326167 ~ 14334932 (-) False AMCG00015628
TU124012 other upstream 14395 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other upstream 14878 14690870 ~ 14695370 (-) True AMCG00015645
TU124167 other upstream 426625 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 494623 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 583469 15259461 ~ 15260484 (-) True G99454

Expression Profile