RNA id: AMCG00015645


Basic Information

Item Value
RNA id AMCG00015645
length 2004
RNA type mRNA
GC content 0.63
exon number 10
gene id AMCG00015645
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14680794 ~ 14738274 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTGGCCTCCGCCGTGGTGGTGTGGGAATGGCTGAACGAGCACGGGCGCTGGCGGCCCTACAGCCCGGCCGTGTCGCACCACATCGAGGCGGTGATCCGGGCCAACCCCCGAGGCGGCAGCGTCGTGCTAGGCCAGGTCGACAGCAAGCTCTCGCCCTACATCATAGATCTGCACTCCATGCACCAGTTCCGACAGGACACCGGCACTCTCCGGCCTGTGCGCCGCTCCTTGTACGAGCCCTCCTCGGCTCCAGCACAGGGCTGGCAGTGGGAATGGGAGGGGGACGGTGGGCGATGGACCCCCTATGACACCCAGGTGTCCATCGCCCTGCAGTGCGCGATGGACCGGCAGCTTCCCTGGCTGGACTTGGCACCGCTTGGGTTCTGCTACACCGTGGACCTCCAGAACATGACCCAAGTTAACCAGCAGACCCACAGACGCAGACGGGTCCAACGTCGGTCTGATCAAGCCTACCCCTTGGTGACAGGGGTTGGGGGAGGAGGTGGGGCAGGAGCACgggctgggggagggggtggagcCATGGTGATGGCTatgggtggaggaggaggagcaggaggaggaggaggtgggaaTGTCCAAGCCAGCGCGGGAGCCAATGGCAGCAGTAGCAGTAATGGTGGAAGTGGGTTGGTTGGTGTTAATAGTGGGATTTTCTCCACTGGTGCACTGTCAGCCGCACTGGCCTCCCTGCCTCAGGCCTGTGGCTGCCCACAGTGCATGCTGGTCCTCAGTGTCAAGGCACACTCTCTGGCACACTCTCTGGGTGCCACACAAGGGAGGAAGCCACAGCAACTACAACTACAGCAGCAGCTACAGTTCAAGGCTCCTGTTTCAAAGACTGGTTCCATTTCTGCCACCATTCCTACtcctactactgctgctgcagcCCCCTCCTCCGCCTCTACTGTTGCGGTTgtcaccacctcctcctcttcctcctcctcctcctcctctgcttcctcttcctcttcttactcctcttcctcccgTGCTCCCCCACCGGTCCCTGGTCCCCCGCTGCCCCCTCGATCCAGTCTTGCTGGTCTGAGTCGCCCAGCACTACAGCGCATTGCCATGGCGCAGTCTCGGGCCCTCATAGCCTCAGGGGTGCCCACTGTGCCAGTGAAGAATCTCAATGGTTCCAGCCCTGTTCACCCAGCACTGGCCGGTATCACTGGTATCCTGATGAGTGCCGCAGGGCTGCCCGTGTGCCTAACACGCCCACCGCGGTTGGTGCTGCACCCCCCCCCTGTCAGCAAGAGCGAGGTGAAGCCCGTGCCCGGCCTGGGACACTGCTGCCGCAAGACCAGCAAGAGGCAGGCGCGCCGAGGTAAAACTCCAGAGGAGGTGGTGAAGAAATACCTACAGAAAGTACGCAACCCCCCTGAAGAGGACTGCACTATCTGTATGGAGTCTCTGGTTGGACCCTCCGGCTATAAGGGCCCTGTGGCAGGTGGGGGGTCGCGGGGGGGCGAGCCAGTGGGCAGACTCATGCGCTGTGGCCACCTCTACCACTTACAGGCCATCCGCATCATCTACACCATCCCCCCGGGCATCCAGggtccCGAGCACCCTAACCCAGGGAAGCCCTACACAGCAAGGGGGTTCCCCCGGCACTGCTACCTCCCTGACAACGAGAAGGGCAGGAAGGTGCTGAGGCTACTGCTGGTGGCGTGGGAGCGGCGTCTGGTGTTCTCGGTGGGTACGTCCAGCACCACGGGCGAGTCTGACACTGTGGTGTGGAACGAGGTGCACCACAAGACTGAGTTTGGGTCCAATCTGACCGGCCACGGCTACCCGGACCCAGGCCACCTGGACAACGTCCTGCAGGAGCTCCGCCAGCAGGGCATCTGggcggaggaagaggaggaggaggaggaggaggagggggcggaGGACGAGGGCGAGAGGGGCGGGGAGGAAgaaggcagaggcagagggggGAGGAGGGTTGGGGATAGGGGCAgagaggggtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123962 lncRNA downstream 56308 14549471 ~ 14624486 (-) True G99289
TU123963 lncRNA downstream 69739 14542961 ~ 14611055 (-) False G99289
TU123979 lncRNA downstream 76817 14538671 ~ 14603977 (-) True G99296
TU123988 lncRNA downstream 117568 14562178 ~ 14563226 (-) True G99302
TU123968 lncRNA downstream 176883 14502764 ~ 14503911 (-) False AMCG00015640
TU124033 lncRNA upstream 85149 14778430 ~ 14782267 (-) True AMCG00015647
TU124037 lncRNA upstream 95638 14788919 ~ 14789198 (-) True G99332
TU124051 lncRNA upstream 147355 14840636 ~ 14840842 (-) True G99341
TU124053 lncRNA upstream 186479 14879760 ~ 14880075 (-) True G99343
TU124114 lncRNA upstream 187373 14880654 ~ 14881619 (-) True G99390
AMCG00015644 mRNA downstream 4802 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015642 mRNA downstream 104979 14571978 ~ 14575815 (-) False AMCG00015642
AMCG00015641 mRNA downstream 160508 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015640 mRNA downstream 165515 14503504 ~ 14515279 (-) True AMCG00015640
AMCG00015635 mRNA downstream 206692 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015647 mRNA upstream 86988 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015649 mRNA upstream 228031 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015651 mRNA upstream 246765 14940046 ~ 14943540 (-) True AMCG00015651
AMCG00015652 mRNA upstream 255962 14949243 ~ 14955830 (-) True AMCG00015652
AMCG00015655 mRNA upstream 400839 15094120 ~ 15108025 (-) True AMCG00015655
TU123993 other downstream 103161 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 107705 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 197886 14481194 ~ 14482908 (-) True G99286
TU123851 other downstream 224099 14447711 ~ 14456695 (-) True G99213
TU123831 other downstream 345862 14326167 ~ 14334932 (-) False AMCG00015628
TU124167 other upstream 409336 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 477334 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 566180 15259461 ~ 15260484 (-) True G99454
TU124288 other upstream 1007797 15701078 ~ 15703290 (-) True AMCG00015666
TU124430 other upstream 1324302 16017583 ~ 16102456 (-) True G99605

Expression Profile