RNA id: TU124033


Basic Information

Item Value
RNA id TU124033
length 2398
lncRNA type sense_over
GC content 0.42
exon number 4
gene id AMCG00015647
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14778430 ~ 14795425 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGAGGTTAAATTTGCTTCATGCTCTTAATCTATACCGCTTTCATACATCTTCCTCCCGAAAAACCTCTAAAGGGttttgcctgtctttaaatACCTGCGGTCTGCATGTTTGATGAAGTAGGTCTGTACAGAGTTCCTACAGTCGGATCAAGCTCTGATCCTGCTCAAAAGCAGGATCATTTTTGATTCCGCATCTGAGCGCAGATTGAACCCTGATCCGTGTAGTACAacaaggagagagacagaaacagaggaGCAGAAATTGAGTGACCCCCACCTccttgtgctgtgtgtctgtgtttaagaCCCCCCTCAGGAGATCACATACACCACAGTGACTGCCAAGCCCTACCAGACACAGAGAGCAGCTGGCAGCAAGAAACAGGGCTCTTCACAGGGGAATGAGTCTGACCATGGAAATACTGCTGCCTCAGGTGATGACATTGTGTATGCCTCCATTAGCCGAGGCCGCCCCCACAGACAGTCTGGCAGGTCTGCTCGCAACAAGAACATGGAAAATGACGAGTATTGCATCTACGCCGTTGTGCAGACGTAGGAGCTGATTCTGTcggtgggggggcagagggaCGAGGAGACCCCCCCCTGCCCACCCCTGCCAGTACCAGTATTGACAGGGGGCACAACAGCATTAATATCCTGATATCAGCAGTGCAGAGACATCTCCAGAGAAAGAAGAGTACTGGTGAACAGGTTTAACACAGCTTCCTAACACAAAACAACTGATAAATGTGCTCTGGGCAAAGTGACCTCCCCATAAAGAGCCATCTTATCTGGACATTTGTCTACAATCTGTAGCTAGTATCATGGACcaaatgcttattttttcaaagcaaGAGAAATAAaggcagattttattttacagaagtaCAGTTCTGGAATTTAACAGGGACTACATTTAGGGACAGAAACCAAATGAGCAATGTTTGCACTGAAGCAAAAACCTTTGTATCCTGATGATGTAGTGTTTGGTAAAAGCAATATGACATCTTACCACCTGTTCATACTCAGCTTTTTAACAGGTGTAAAATCAACAGAAAAAGTGTCAAAGCAAAGCCAGAAAGAAACTATACTGTGTATTTTTACTGtatcaaaactttaaaaaaaaatcacaaattgtaaatgtaaatatttgcatgcactttttacttaaaatatgttataaTCTATAACCCCATTAGTTAAAATAACACAGTCATTGTGGTACTGAATGGCTTGTGCGTGTCAGGGAACAGTGGGAGGCAATGGGATTAACCTGGCTAATGACAGATTAATATGCCCTTTCACACAAGTGTCAAATAATCCATGTTAATgcttttaaagttatatatattttttttaatacagcaatgtagagcgagagagagacagagagatggagaggcaaggagacagaaagacagaggtCAGCTCTCTGGTCAGAATGTGGGTTTGGATGTGTTGCAAGaaacagaagaggaagaggatgagTGTTTCTGTCACTTCTTATTTACTCTAGTGGTTTTCCAACTGttagcatttacattttctatctGATCAGCTGCTTCTGCTGATAAAAGCTGATAAAACACACCAAAGCCTGCCTACAATCACAGGTCTGATCTTCAGCTCGCTTAGCTCTCTGTGGATTCAACCCCTCACTCTCTGGAGCACTGAACCCCCCCACCAGCTCTCGGTACAGGGATGCTGCGAATGTGAACCTGAAAGCACTTAATCTCAAAGCAAATTATCTCAGGGAAATGGCTTGAATTAGCTTGAACAATTACAGAGCAAGATTAAGATGACTCAGGACCGATCAACTGGTCAGCTCTGCTCTGTCAGAAGTCCATTCCCCTTCGGTTGGCTGTTATTGTGAAAGTATTGCTGGATGATGCTGATGTGTCACGGATTGAAcactgtgggagagagcagaAACAGGCCAAACACGCCAACAGTCGATGTAAGGGACTCCACACGCCTCTGTGGTACTGGAGGCCCTGTTGTGGCACAGGTGTTGCAGACAGGGTTATACTGTGAACAATTAAGGGTTCAAAAGTGTATAGACCAGAAGCACATCCCAAATCTTATGAGGTGCCTGGTAAATTGAGAGATCACCACATAATATACTGGGAATCAGCAGTGACTGTATTTCGgcatcttttttttctatttagataaatagatatttatttgttatttgaaaatgttaaaagtgctctccatgaaaaataacttaaataaaatactgtctCGCAAGACATTGAGctgtctgctgtgtgtttctggTGGGGTTTTCTTTTACCTTTGTAATGTAACAGCTGCATTCCTCTTATAGTTCTCTGcagcatgtattttattttattaaagtttaatgatattaacaaaataaaacaacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123962 lncRNA downstream 153944 14549471 ~ 14624486 (-) True G99289
TU123963 lncRNA downstream 167375 14542961 ~ 14611055 (-) False G99289
TU123979 lncRNA downstream 174453 14538671 ~ 14603977 (-) True G99296
TU123988 lncRNA downstream 215204 14562178 ~ 14563226 (-) True G99302
TU123968 lncRNA downstream 274519 14502764 ~ 14503911 (-) False AMCG00015640
TU124037 lncRNA upstream 6652 14788919 ~ 14789198 (-) True G99332
TU124051 lncRNA upstream 58369 14840636 ~ 14840842 (-) True G99341
TU124053 lncRNA upstream 97493 14879760 ~ 14880075 (-) True G99343
TU124114 lncRNA upstream 98387 14880654 ~ 14881619 (-) True G99390
TU124121 lncRNA upstream 120434 14902701 ~ 14902927 (-) True G99395
AMCG00015645 mRNA downstream 85149 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015644 mRNA downstream 102438 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015642 mRNA downstream 202615 14571978 ~ 14575815 (-) False AMCG00015642
AMCG00015641 mRNA downstream 258144 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015640 mRNA downstream 263151 14503504 ~ 14515279 (-) True AMCG00015640
AMCG00015649 mRNA upstream 139045 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015651 mRNA upstream 157779 14940046 ~ 14943540 (-) True AMCG00015651
AMCG00015652 mRNA upstream 166976 14949243 ~ 14955830 (-) True AMCG00015652
AMCG00015655 mRNA upstream 311853 15094120 ~ 15108025 (-) True AMCG00015655
AMCG00015659 mRNA upstream 388349 15170616 ~ 15200791 (-) True AMCG00015659
TU124012 other downstream 40156 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other downstream 83060 14690870 ~ 14695370 (-) True AMCG00015645
TU123993 other downstream 200797 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 205341 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 295522 14481194 ~ 14482908 (-) True G99286
TU124167 other upstream 320350 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 388348 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 477194 15259461 ~ 15260484 (-) True G99454
TU124288 other upstream 918811 15701078 ~ 15703290 (-) True AMCG00015666
TU124430 other upstream 1235316 16017583 ~ 16102456 (-) True G99605

Expression Profile