RNA id: AMCG00015651


Basic Information

Item Value
RNA id AMCG00015651
length 1788
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00015651
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14940046 ~ 14943540 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttatctttttgcaGATCCTTTTAAGGGTATGTACTGTGTGCAATgagtttatattaaatatggaGCATCAGCCATCAGGTATTCTGTATTCTTAGCCATGAGAGACACACAGTATAGTTGAATCATTTCTGCTCTTGGAAAATAGTCCAGTGTTACCTCTTTGTCACTGTGTTCAGTGCTATTACCTCTCTCACTTTTTGTTCAGTGCTGTTACccctctgtgtcactgtgtgttcagtgctgttagctctctctctctctcactgtatgTTCAGTGCTGTTATCAGTCAGGCTATTGTCGATACAGGCCAGTCCTCTATCATATTGGACAGAGTGGCTCAGAATGTTTGGATGCCTTATTTAAATACcatatgttttaataacattgttttacttCTCATATTTTTTGCAGAGTTTTTTAGAGTGCTGATGAAGACTGAGGGAGAGTCTGTCACTTTCAAAGCCCCGGTGCAGAATGggctgttgacatggaatggagagtATATTGCAGAGGTGTCCAATGGGGACTGTACTGTATACAAAGAGCACTTTAAAGACAGAGTGGAGTGGAGGAACAATAAATTCAACATCAATGATTTAGTCTCAGCGGACAGCGGGACTTATAGAGTGAAAGACAATGATGGACAGAGGAGCGTCTCAGAATTTCACCTCTTTATGCGTGCCCCGGTGAAGAAAACTGAGGGGGACTCTGTCACCTTTGAAGCCCCGGTGTGGAATGGGGCCCTGAAATGGAAAGGGGAAGTGATTGCAGAGGTGTCCAGCGGGCAGTGTGTTGTCAAGAGTGGCCAATTCACAGGCCGAGTGGAGTGGAaagatacatttcaaatcaataatGTAAACGTAGGTGACAGTGGGGTCTACACAGTGCAAAACAAGGAAGGCCGGAAGACGTGCCGAGGGTTTGATCTGATTGTGCGTGGGGGTCAGGACCCACTGCACAGCCCACATGATGTCATTGTGATGTCACAGCTGGGTAAGAGCAGCACTGACTGCAGCACAAGGCCAGAACACAAGCCAGCCTCGGCCCAGGAACAAGTGGTAGACCAGttggACGAAGTGGAACTGGACTCTATACTTGCTGATACTGCTGAGACTTACTGATGATACAGCCAAATATACTAATCAGATTATCAACTTCCAAATGTGATTCATGATTGCTTATTTCATTTCAGTCTGTAGGCTGACAAACTTTTAAAgtcatatgtttgttttttgtatgcttTATGCTTTACAATTATGCATTGTTATGGTAGGGTAAATAATTTGAATCTGCACTGTTAAAGATTGAAGCCACTCCTGCACTTAGCTGTGTGTCATGTGTGTCCTGTTAGTGCAGCACTGCAGTGGAATCAGTATTATTCTCATTTTTATTCCTCCCCCCCCGCAGTGTGGTTATTTTCTGGGTGTTGCCATGACAGCAAAGTAGAATGCTGATGTATTCAGTGACAAATTGTGCCTCAGTGAAGGCCCAAAGCCTGCGGCCACACTGCACACCCTGTGGGACACTGGACACTGGACTCTGGGCTGCACGGTcctgccagtgtgtgtgttcacagggACCAGTGCTGTGGGCCGGGCCTGTACTTCTGTAGGACTGGTTTTGTGCTCAGATACACTCATAATATCTGCATCTGTACAGAAAATCACATTACAACTGGTGCCTGGAAAATCTCTTTCTTATCTCTATTtgttatgattgtttttttgcaaggatttgtacttttctattttttataagTATGTCTTACTATATCACACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124122 lncRNA downstream 32721 14905981 ~ 14907325 (-) True G99396
TU124121 lncRNA downstream 37119 14902701 ~ 14902927 (-) True G99395
TU124114 lncRNA downstream 58427 14880654 ~ 14881619 (-) True G99390
TU124053 lncRNA downstream 59971 14879760 ~ 14880075 (-) True G99343
TU124051 lncRNA downstream 99204 14840636 ~ 14840842 (-) True G99341
TU124142 lncRNA upstream 37751 14981291 ~ 14983572 (-) True G99410
TU124144 lncRNA upstream 49366 14992906 ~ 14996764 (-) True G99411
TU124145 lncRNA upstream 51998 14995538 ~ 15052530 (-) True G99412
TU124162 lncRNA upstream 109756 15053296 ~ 15181986 (-) True G99424
TU124171 lncRNA upstream 181095 15124635 ~ 15126671 (-) True G99430
AMCG00015649 mRNA downstream 11941 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015647 mRNA downstream 144621 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015645 mRNA downstream 246765 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015644 mRNA downstream 264054 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015642 mRNA downstream 364231 14571978 ~ 14575815 (-) False AMCG00015642
AMCG00015652 mRNA upstream 5703 14949243 ~ 14955830 (-) True AMCG00015652
AMCG00015655 mRNA upstream 150580 15094120 ~ 15108025 (-) True AMCG00015655
AMCG00015659 mRNA upstream 227076 15170616 ~ 15200791 (-) True AMCG00015659
AMCG00015658 mRNA upstream 292594 15236134 ~ 15244894 (-) True AMCG00015658
AMCG00015660 mRNA upstream 306437 15249977 ~ 15252721 (-) False AMCG00015660
TU124012 other downstream 201772 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other downstream 244676 14690870 ~ 14695370 (-) True AMCG00015645
TU123993 other downstream 362413 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 366957 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 457138 14481194 ~ 14482908 (-) True G99286
TU124167 other upstream 159077 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 227075 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 315921 15259461 ~ 15260484 (-) True G99454
TU124288 other upstream 757538 15701078 ~ 15703290 (-) True AMCG00015666
TU124430 other upstream 1074043 16017583 ~ 16102456 (-) True G99605

Expression Profile