RNA id: AMCG00015652


Basic Information

Item Value
RNA id AMCG00015652
length 1073
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00015652
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14949243 ~ 14955830 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTGTGTCCATGTCCAGTCCAGTCTGACATGCTACTGAAGGTCACTGTGGGTGGCTCAGTCACTTTTCCTGCCCCAGTGGTCCAGGAGGGCTTCCTGAACTATGGAGATGATGGCAAGATTGCACGAATGTCCTACAGGGAGATCACAGGTGTCTATGTGGAGAGGTTCAAAGGGAGAGTGCTCTGCGACAACAGCACTAGATTCTTTCACATCAGAAACCTCAGCACACAGGACACTGGGAAGTACACAGTGGAGGACATAAGAGGAGGGAGCGACTCCATCACAGTGTTCCAGCTGACAGTGTACAATCGCGTGTCGAAGCCTGTAGTGACCCTCTCTGCGAAGGGCAGCCCTCCTGACACACTTTGTACCCTGCAGTGCTCTGTGGAGAACGATGCAGAGGTGACCCTGTACTGGCACAGCCTGGGGGACACAGTGTCCAGCACCTCCTCCTCTGACCTCAACTCCACCCTGACACTTCACCTGGGAGTCAAGATACTCTCTGACTCTTACAGCTGTGTGGCCTCCAATCCTGTCAACCTGTGGATCGCCAGCGCTGATACTGAGGATCTCTGCCTTGATAAACCAGACTTCCTCAGTCCTGGGGAGAAGGCAGCTATTGGGATTGCAGTGATTATAATTCTCATGgggattgtgattgtgattttactttacattaaGAAGAAACCAATGGTTCTCATTAAAGATGTGGGGGAGTCTGTCACCTTTAAAACTCCACTGAAGAATGGGGTCTTGACATGTCAAGGAGAGGAGATTGCAGAGGTATCCAATGGGGTGTGTACATGCACCATTCTCTTTAAGAATGTGGGGGAATCTGTCACTTTCAGAGCCCCAATCCAGAATGGGCTCTTGACATTTCAAGGAGAGAGCATTGCAGAGCTGTCCAGTGGCATCTGCACTGTCAAAAATGAGCGATTCACAGGCAGGGTGCAGTGGAGCGACAGCAATGTTCACATCAGCAACTTAACCTTAGAAGACAGTGGTATCTTTAAAGTACAAGATCATGACTGCAAGGACAAGGTCATGGAATTTCACCTCATTATTATGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124122 lncRNA downstream 41918 14905981 ~ 14907325 (-) True G99396
TU124121 lncRNA downstream 46316 14902701 ~ 14902927 (-) True G99395
TU124114 lncRNA downstream 67624 14880654 ~ 14881619 (-) True G99390
TU124053 lncRNA downstream 69168 14879760 ~ 14880075 (-) True G99343
TU124051 lncRNA downstream 108401 14840636 ~ 14840842 (-) True G99341
TU124142 lncRNA upstream 25461 14981291 ~ 14983572 (-) True G99410
TU124144 lncRNA upstream 37076 14992906 ~ 14996764 (-) True G99411
TU124145 lncRNA upstream 39708 14995538 ~ 15052530 (-) True G99412
TU124162 lncRNA upstream 97466 15053296 ~ 15181986 (-) True G99424
TU124171 lncRNA upstream 168805 15124635 ~ 15126671 (-) True G99430
AMCG00015651 mRNA downstream 5703 14940046 ~ 14943540 (-) True AMCG00015651
AMCG00015649 mRNA downstream 21138 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015647 mRNA downstream 153818 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015645 mRNA downstream 255962 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015644 mRNA downstream 273251 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015655 mRNA upstream 138290 15094120 ~ 15108025 (-) True AMCG00015655
AMCG00015659 mRNA upstream 214786 15170616 ~ 15200791 (-) True AMCG00015659
AMCG00015658 mRNA upstream 280304 15236134 ~ 15244894 (-) True AMCG00015658
AMCG00015660 mRNA upstream 294147 15249977 ~ 15252721 (-) False AMCG00015660
AMCG00015662 mRNA upstream 382206 15338036 ~ 15339062 (-) True AMCG00015662
TU124012 other downstream 210969 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other downstream 253873 14690870 ~ 14695370 (-) True AMCG00015645
TU123993 other downstream 371610 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 376154 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 466335 14481194 ~ 14482908 (-) True G99286
TU124167 other upstream 146787 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 214785 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 303631 15259461 ~ 15260484 (-) True G99454
TU124288 other upstream 745248 15701078 ~ 15703290 (-) True AMCG00015666
TU124430 other upstream 1061753 16017583 ~ 16102456 (-) True G99605

Expression Profile