RNA id: TU122572


Basic Information

Item Value
RNA id TU122572
length 724
RNA type TUCP
GC content 0.49
exon number 2
gene id G98269
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10288026 ~ 10340868 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacaataaaccCACTCACATCGGTTCtgtttaaaaatcactttatgtattttttccctccccAGGTACAAATCATGATcataaaaaaggcaaagaaaaaaacaataacaagaacTAAACCAAGAAGTGCAATAAAACCCTGCAGTATTGCTGTGTTCAGAGTTTGGCAGAAAAGCAGTTTGTATTTGGCATTGCATTTCCATGGGCACAGTGTGGCACTGGTCAACACAGTGAGGCAGGCTGTCCTACTGACCCGTCGTCTTCCCCGGCCAAtcagcagtcagtgccagcTGTCAATCAGAATGGAGTTGAACGCtccatttttaaaaaaacaggtcAGTAGCCATACGATCATAACCTGAAGATCTCATGCATAAGGATACACAAGGCGAGAGCACGTACAGAGCACTGTGGACAGGCACCGTGCCGGGCTGCGTTTGGCACAATGATTCAGAGGCAAAAGGAGACTCCCATGGTACAGCATTCAAAGCCGCTTTGCAGACCGGATTGGGAGCTGAAGATCCTGGCGTGGCCCGTGTCAGGTGACCACTCTCCAGCGCTCCCTCTAGCTGTCCCCACCGCGCTGCCGACTGGGCTGCTGCATCATTAGGCCTGCGCACATTTCTCAGTTTACATCCCCAGAAATCTAAAGAGGAAAACGCCCAAGAAAGGTGTGGGATGGGGGAATGGgggtatacatgtgtgtCTGtaagtgtggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122498 lncRNA downstream 103474 10173101 ~ 10222525 (-) True G98216
TU122493 lncRNA downstream 160602 10107233 ~ 10165397 (-) True G98211
TU122438 lncRNA downstream 250106 10026114 ~ 10075893 (-) True G98163
TU122439 lncRNA downstream 300923 10021351 ~ 10025076 (-) False AMCG00015479
TU122440 lncRNA downstream 304444 10018764 ~ 10021555 (-) False AMCG00015479
TU122588 lncRNA upstream 37417 10378285 ~ 10380049 (-) True AMCG00015501
TU122626 lncRNA upstream 148711 10489579 ~ 10493106 (-) True G98314
TU122734 lncRNA upstream 327021 10667889 ~ 10704395 (-) False AMCG00015519
TU122740 lncRNA upstream 367553 10708421 ~ 10708752 (-) True G98399
TU122857 lncRNA upstream 507421 10848289 ~ 10849258 (-) False AMCG00015524
AMCG00015494 mRNA downstream 55687 10267939 ~ 10270312 (-) True AMCG00015494
AMCG00015496 mRNA downstream 66910 10253692 ~ 10259089 (-) True AMCG00015496
AMCG00015495 mRNA downstream 114717 10200780 ~ 10211282 (-) True AMCG00015495
AMCG00015493 mRNA downstream 127397 10195564 ~ 10198602 (-) True AMCG00015493
AMCG00015497 mRNA downstream 132141 10188842 ~ 10193858 (-) True AMCG00015497
AMCG00015500 mRNA upstream 12341 10353209 ~ 10355965 (-) True AMCG00015500
AMCG00015501 mRNA upstream 38902 10379770 ~ 10385379 (-) False AMCG00015501
AMCG00015507 mRNA upstream 53576 10394444 ~ 10404856 (-) True AMCG00015507
AMCG00015506 mRNA upstream 90930 10431798 ~ 10437010 (-) True AMCG00015506
AMCG00015508 mRNA upstream 109361 10450229 ~ 10460735 (-) True AMCG00015508
TU122509 other downstream 127345 10196618 ~ 10198654 (-) False AMCG00015493
TU122510 other downstream 127345 10196618 ~ 10198654 (-) False AMCG00015493
TU122511 other downstream 127345 10196618 ~ 10198654 (-) False AMCG00015493
TU122512 other downstream 127345 10196618 ~ 10198654 (-) False AMCG00015493
TU122513 other downstream 127345 10196618 ~ 10198654 (-) False AMCG00015493
TU122879 other upstream 673757 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 673757 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 682301 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 892447 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 916410 11257278 ~ 11261168 (-) False AMCG00015535

Expression Profile