RNA id: TU122882


Basic Information

Item Value
RNA id TU122882
length 478
RNA type TUCP
GC content 0.52
exon number 5
gene id G98502
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11014625 ~ 11245562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNGCAAACCCATTGTCAATGCCTTAATGGCCCTTCAAGAAGGCAATGAGGAGGCACAAAAGCAGTTGCAGCAGGTGCTGGAGAACTGGGACCAGCAGAGCGAGGCAGAGCAAGTGAAGACACTTTCCGACCTCTGCCAGGAAATGTGCTTAAACTACATAGATCAACCCTCTCTGGAAGAGGCTTTAACACTAAACAGCATCTCTAATGAGAATGTTCTCCCCAGTGACCTGGTCCAGGATGAGAAGATTTACCTGATCGACGCTGGCCTGGCAATTAACTGTGGCTACCCGCTGGTCCTGAGGCCGGAGAGACAAGTGCAGCTCATCCTGTCCTTCGACTTCAGCGCTGGAGACCCATTCCTGACAGTCCATCAAGCAGCAGAGTACTGTAAGAAGAACAATATTCCCTTCCCAGACATCCCAacggtgagtgaggaggaggaggcctgTCCCTCAGACTGCTACATCTACAGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122857 lncRNA downstream 165367 10848289 ~ 10849258 (-) False AMCG00015524
TU122740 lncRNA downstream 305873 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 310230 10667889 ~ 10704395 (-) False AMCG00015519
TU122626 lncRNA downstream 521519 10489579 ~ 10493106 (-) True G98314
TU122588 lncRNA downstream 634576 10378285 ~ 10380049 (-) True AMCG00015501
TU122914 lncRNA upstream 87101 11332663 ~ 11334847 (-) True AMCG00015540
TU122937 lncRNA upstream 108221 11353783 ~ 11357765 (-) False G98543
TU122939 lncRNA upstream 132451 11378013 ~ 11386199 (-) True G98543
TU122994 lncRNA upstream 302073 11547635 ~ 11547875 (-) True G98591
TU123032 lncRNA upstream 1154171 12399733 ~ 12405371 (-) True AMCG00015557
AMCG00015533 mRNA downstream 7250 10997549 ~ 11007375 (-) True AMCG00015533
AMCG00015534 mRNA downstream 19740 10989882 ~ 10994885 (-) True AMCG00015534
AMCG00015530 mRNA downstream 29415 10977415 ~ 10985210 (-) True AMCG00015530
AMCG00015531 mRNA downstream 73130 10924861 ~ 10941495 (-) True AMCG00015531
AMCG00015524 mRNA downstream 165204 10843685 ~ 10849421 (-) True AMCG00015524
AMCG00015541 mRNA upstream 25977 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015540 mRNA upstream 88817 11334379 ~ 11345490 (-) False AMCG00015540
AMCG00015557 mRNA upstream 1159625 12405187 ~ 12430648 (-) False AMCG00015557
AMCG00015556 mRNA upstream 1217494 12463056 ~ 12469988 (-) True AMCG00015556
AMCG00015560 mRNA upstream 1236160 12481722 ~ 12507107 (-) True AMCG00015560
TU122572 other downstream 673757 10325999 ~ 10340868 (-) False G98269
TU122510 other downstream 815971 10196618 ~ 10198654 (-) False AMCG00015493
TU122906 other upstream 11716 11257278 ~ 11261168 (-) False AMCG00015535
TU122938 other upstream 108221 11353783 ~ 11386199 (-) False G98543
TU122943 other upstream 168805 11414367 ~ 11416662 (-) True G98546
TU123499 other upstream 2212565 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 2425753 13671315 ~ 13739119 (-) True AMCG00015606

Expression Profile