RNA id: TU122894


Basic Information

Item Value
RNA id TU122894
length 954
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G98510
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11143518 ~ 11149864 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGGAAACAGCACTTAATGAAGGAATCCTGTTTACTGATTCTACAAGCTACAGACAGACCTTGTTATAGTACTGAGGGTGGACTTTGAAGTTGATGACCAGGACGCAGATAGCTGGTCTTTCATCAATAAAAGGAAATAgttatttcaaagaaaagacaTGGGTGACCAGCCAAGTAAAACAGAGTATGTATACAGttctgtgactgtgactgtgtaTTCATGCAGCATGTGTGGCACAACTCTTCAGGAATCGAATTTGATGAGAATGGGCAACCGCATTTACTGTCAAAGCTGTTTTcaacatgaaagaaataaacaaactgaagaaGCTGCAAACCAAAGACTACAGGAAATGCAACGTGCACAAAAAGCTGAGAgcagaagaaaagagaaactggAAAGAGAAAGAATTCAAGGGGAACATAAAAAAAGACTtgaggaaataaagaaatgcaatcaAGTATAATTTCCTTCAGTATTTATCAATATTCTATGGAAATGTCATTCTCAACTATTGcaaataatgaatgtataattaaaaaaatatgattataaatGCCAGACAACTTCCAAGCTGTAAACAATATGGcataaacttaaaaatgttacactgtTCTATGGTCATGGTTTACATAACCAACTGCATCACCGTTAAAATTGATAAAAAATGCTATTGgaatttacttttaataaaacaatattataagaAAGTGttctgttagtttgtttttctgtcagttTCAATCCTTTATTCTACAATTGTCAAAATAGATTGCATTAGCATACTTTTTAATCTTAGCTGGGACTGAATCAGTCGTTTGACCCACACACCtgtacaaacctgtactcaaTTACATCTATTTTTTCTCTCAGACAATGCAAcaggttttctttatttgtcaAATCATAGCTGTTAAGTAATACTACTCTTGTATCCTATAAGATGCCCTGG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122857 lncRNA downstream 294260 10848289 ~ 10849258 (-) False AMCG00015524
TU122740 lncRNA downstream 434766 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 439123 10667889 ~ 10704395 (-) False AMCG00015519
TU122626 lncRNA downstream 650412 10489579 ~ 10493106 (-) True G98314
TU122588 lncRNA downstream 763469 10378285 ~ 10380049 (-) True AMCG00015501
TU122914 lncRNA upstream 182799 11332663 ~ 11334847 (-) True AMCG00015540
TU122937 lncRNA upstream 203919 11353783 ~ 11357765 (-) False G98543
TU122939 lncRNA upstream 228149 11378013 ~ 11386199 (-) True G98543
TU122994 lncRNA upstream 397771 11547635 ~ 11547875 (-) True G98591
TU123032 lncRNA upstream 1249869 12399733 ~ 12405371 (-) True AMCG00015557
AMCG00015532 mRNA downstream 118905 11012650 ~ 11024613 (-) True AMCG00015532
AMCG00015533 mRNA downstream 136143 10997549 ~ 11007375 (-) True AMCG00015533
AMCG00015534 mRNA downstream 148633 10989882 ~ 10994885 (-) True AMCG00015534
AMCG00015530 mRNA downstream 158308 10977415 ~ 10985210 (-) True AMCG00015530
AMCG00015531 mRNA downstream 202023 10924861 ~ 10941495 (-) True AMCG00015531
AMCG00015536 mRNA upstream 29228 11179092 ~ 11183890 (-) True AMCG00015536
AMCG00015535 mRNA upstream 35996 11185860 ~ 11260595 (-) True AMCG00015535
AMCG00015541 mRNA upstream 121675 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015540 mRNA upstream 184515 11334379 ~ 11345490 (-) False AMCG00015540
AMCG00015557 mRNA upstream 1255323 12405187 ~ 12430648 (-) False AMCG00015557
TU122572 other downstream 802650 10325999 ~ 10340868 (-) False G98269
TU122510 other downstream 944864 10196618 ~ 10198654 (-) False AMCG00015493
TU122907 other upstream 83451 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 107414 11257278 ~ 11261168 (-) False AMCG00015535
TU122938 other upstream 203919 11353783 ~ 11386199 (-) False G98543
TU122943 other upstream 264503 11414367 ~ 11416662 (-) True G98546
TU123499 other upstream 2308263 13458127 ~ 13459789 (-) False AMCG00015598

Expression Profile