RNA id: TU123061


Basic Information

Item Value
RNA id TU123061
length 526
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G98650
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12449296 ~ 12449821 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGAACCGCCAAAGGTGCTTGGCCGCCCACCTTGTTGAAGAGGATGGACACGAAGTAGTAGTCGAGCAGGAAGGTCTCGGAGAAGCGGGGGTAGTCGCAGTGGAAGAACAGTACGGTGAAGCCCAGCGTGACGTACTGCATGGACGGGGTGCACAGGGACGAGCGCAGCAGCTTCATCCCCGCTACCGTGATGAACAGAGCTCGGCTGCtgcgggggggagagagaaggttAAAAATGAAGAGTTCTTAGTTTCCTGACTGTAGTGTGTCTTATCATCTACCAAACAATTCCCCTCCAGTCTGACTGACGGCCGTGCGgcgcagtgcagtgttgtgtacaGTGTGGCTGTGCGTCTCGGGGCTGCATGTGCAGGTCCTTACTAGACCCCCAGTTTCTCTGGTTGGGCGCTGATGGCGCGGGCCTCTGTGGTCAGGGAGTTGAGGATGACCGCCGGGTAGATGAAGTATTTCTCCACACACTGCAGCCAGGCGTACAGCTTCTCAAACCACATCAGCTGGGCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123060 lncRNA downstream 1467 12447588 ~ 12447829 (-) True G98649
TU123059 lncRNA downstream 2343 12445998 ~ 12446953 (-) True G98648
TU123032 lncRNA downstream 43925 12399733 ~ 12405371 (-) True AMCG00015557
TU122994 lncRNA downstream 901421 11547635 ~ 11547875 (-) True G98591
TU122939 lncRNA downstream 1063097 11378013 ~ 11386199 (-) True G98543
TU123062 lncRNA upstream 2541 12452362 ~ 12452577 (-) True G98651
TU123063 lncRNA upstream 3045 12452866 ~ 12453153 (-) True G98652
TU123064 lncRNA upstream 3419 12453240 ~ 12453549 (-) True G98653
TU123065 lncRNA upstream 3792 12453613 ~ 12453974 (-) True G98654
TU123067 lncRNA upstream 4804 12454625 ~ 12454855 (-) True G98656
AMCG00015557 mRNA downstream 18648 12405187 ~ 12430648 (-) False AMCG00015557
AMCG00015540 mRNA downstream 1103806 11334379 ~ 11345490 (-) False AMCG00015540
AMCG00015541 mRNA downstream 1126796 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015535 mRNA downstream 1188701 11185860 ~ 11260595 (-) True AMCG00015535
AMCG00015536 mRNA downstream 1265406 11179092 ~ 11183890 (-) True AMCG00015536
AMCG00015556 mRNA upstream 13235 12463056 ~ 12469988 (-) True AMCG00015556
AMCG00015560 mRNA upstream 31901 12481722 ~ 12507107 (-) True AMCG00015560
AMCG00015562 mRNA upstream 123642 12573463 ~ 12574052 (-) True AMCG00015562
AMCG00015561 mRNA upstream 173437 12623258 ~ 12640668 (-) True AMCG00015561
AMCG00015568 mRNA upstream 314091 12763912 ~ 12779914 (-) True AMCG00015568
TU122943 other downstream 1032634 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 1063097 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 1188128 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 1188128 11257278 ~ 11261168 (-) False AMCG00015535
TU122884 other downstream 1211446 11023169 ~ 11237850 (-) False AMCG00015532
TU123499 other upstream 1008306 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 1221494 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 1391408 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 1391408 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 1391408 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile