RNA id: TU123069


Basic Information

Item Value
RNA id TU123069
length 448
lncRNA type inter_gene
GC content 0.71
exon number 1
gene id G98658
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12457626 ~ 12458073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgCGTGGTGCTGCCCCCCGCGCAGGCGTCCCTGAGCTGCTGCTGCACTGGACGTCTGCCCCCTCCGCCCCTGCAGCGCCACTGAATCCTTTCCTCCCAGAGAGGCTCCACTTCCCATACAGCCCCTCGTAGCCCAGGCCAGCCCCACCGCTGCCCAGCCCCATCCCTGACCTGTGGGGCCCTCGCTGGGGAGGGGGCGGCCCAGGGCAGTCCTGGGGGGCAACTGTGCAGAATCGCTCagcagggagaggggggagTGTGGCGGGGCTGCCGAAGGAGAGCTGGGAGCTGGAGAGGCGCTGGCCCAGCAGCCCCTGGATGGAGGAGGTGCGCTGGAGGGAGGAGCCCATGATGGCCTCACGTCTGCCCTCTGACTGACTGAGCAGCGCGAGGGGGAGGGGCTGGGGGCGGAGGGGCCAGGCCTGCCCGAGCAATAAGGGGGCGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123068 lncRNA downstream 1420 12455930 ~ 12456206 (-) True G98657
TU123067 lncRNA downstream 2771 12454625 ~ 12454855 (-) True G98656
TU123065 lncRNA downstream 3652 12453613 ~ 12453974 (-) True G98654
TU123064 lncRNA downstream 4077 12453240 ~ 12453549 (-) True G98653
TU123063 lncRNA downstream 4473 12452866 ~ 12453153 (-) True G98652
TU123081 lncRNA upstream 12025 12470098 ~ 12470440 (-) True G98662
TU123090 lncRNA upstream 65720 12523793 ~ 12524075 (-) True G98671
TU123294 lncRNA upstream 790763 13248836 ~ 13249283 (-) True G98836
TU123309 lncRNA upstream 802938 13261011 ~ 13262227 (-) True G98844
TU123476 lncRNA upstream 871819 13329892 ~ 13335929 (-) True G98953
AMCG00015557 mRNA downstream 26978 12405187 ~ 12430648 (-) False AMCG00015557
AMCG00015540 mRNA downstream 1112136 11334379 ~ 11345490 (-) False AMCG00015540
AMCG00015541 mRNA downstream 1135126 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015535 mRNA downstream 1197031 11185860 ~ 11260595 (-) True AMCG00015535
AMCG00015536 mRNA downstream 1273736 11179092 ~ 11183890 (-) True AMCG00015536
AMCG00015556 mRNA upstream 4983 12463056 ~ 12469988 (-) True AMCG00015556
AMCG00015560 mRNA upstream 23649 12481722 ~ 12507107 (-) True AMCG00015560
AMCG00015562 mRNA upstream 115390 12573463 ~ 12574052 (-) True AMCG00015562
AMCG00015561 mRNA upstream 165185 12623258 ~ 12640668 (-) True AMCG00015561
AMCG00015568 mRNA upstream 305839 12763912 ~ 12779914 (-) True AMCG00015568
TU122943 other downstream 1040964 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 1071427 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 1196458 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 1196458 11257278 ~ 11261168 (-) False AMCG00015535
TU122884 other downstream 1219776 11023169 ~ 11237850 (-) False AMCG00015532
TU123499 other upstream 1000054 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 1213242 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 1383156 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 1383156 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 1383156 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile