RNA id: TU123090



Basic Information


Item Value
RNA id TU123090
length 283
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G98671
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12523793 ~ 12524075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctgtacacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttttaaattctacacttttgacaatataccctaacatcctgtttgccttttttattgcttccccacattgtttggatggagaaagtgaggagtccacgtagactcctaggtctttctcatgcgatacttcatccagttctgttcctcccatagtgtaattatagtggacatttttattaccggcatgtaataccttgaacttgtccacattgaaattcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123081 lncRNA downstream 53353 12470098 ~ 12470440 (-) True G98662
TU123069 lncRNA downstream 65720 12457626 ~ 12458073 (-) True G98658
TU123068 lncRNA downstream 67587 12455930 ~ 12456206 (-) True G98657
TU123067 lncRNA downstream 68938 12454625 ~ 12454855 (-) True G98656
TU123065 lncRNA downstream 69819 12453613 ~ 12453974 (-) True G98654
TU123294 lncRNA upstream 724761 13248836 ~ 13249283 (-) True G98836
TU123309 lncRNA upstream 736936 13261011 ~ 13262227 (-) True G98844
TU123476 lncRNA upstream 805817 13329892 ~ 13335929 (-) True G98953
TU123470 lncRNA upstream 872572 13396647 ~ 13416500 (-) True G98950
TU123501 lncRNA upstream 940783 13464858 ~ 13519520 (-) True G98973
AMCG00015560 mRNA downstream 16686 12481722 ~ 12507107 (-) True AMCG00015560
AMCG00015556 mRNA downstream 53805 12463056 ~ 12469988 (-) True AMCG00015556
AMCG00015557 mRNA downstream 93145 12405187 ~ 12430648 (-) False AMCG00015557
AMCG00015540 mRNA downstream 1178303 11334379 ~ 11345490 (-) False AMCG00015540
AMCG00015541 mRNA downstream 1201293 11271539 ~ 11322500 (-) True AMCG00015541
AMCG00015562 mRNA upstream 49388 12573463 ~ 12574052 (-) True AMCG00015562
AMCG00015561 mRNA upstream 99183 12623258 ~ 12640668 (-) True AMCG00015561
AMCG00015568 mRNA upstream 239837 12763912 ~ 12779914 (-) True AMCG00015568
AMCG00015570 mRNA upstream 255863 12779938 ~ 12780493 (-) True AMCG00015570
AMCG00015569 mRNA upstream 256672 12780747 ~ 12780971 (-) True AMCG00015569
TU122943 other downstream 1107131 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 1137594 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 1262625 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 1262625 11257278 ~ 11261168 (-) False AMCG00015535
TU122884 other downstream 1285943 11023169 ~ 11237850 (-) False AMCG00015532
TU123499 other upstream 934052 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 1147240 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 1317154 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 1317154 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 1317154 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile