RNA id: TU123476


Basic Information

Item Value
RNA id TU123476
length 2821
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G98953
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13329892 ~ 13335929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNttaaactgggagaaggagattgagccgtacgaagaattcttttaaaggactgtaaagttctttatttaataaagactGCGCTGCCCGCCAGTGCCCACCTGATCGGCCGTCCAATACTGGACCGTGgaggtagatttttttttcctgaaataaaaGACGATACGAGTATgcatagtagcacaatatttaaatttacatgcACACTAGATAATGCATACAATCACAACTTGtgtgttaagaaaaaaacacgTGTTCATATTCACTTCCCCACCTCGCACAGTGACTGTGATTCGATCTGATTGCatgtgttaaaaatgacatcAGACAATTAAACATGAGAGGAAGACGTGGACTGGTGGAAAAGCTCATCATCTGCGTGTCTAACCATGAATAACTATACAaaagagcaaataaatacaggCCGACAAAATATGACAAGTTATTGCAGAGGAGCCGGGCAGGAAAGGTACCGACTGTCTGATGTAGCTAGAACTCTACAaagtggttaagcacagatcaacaacaacacattaaaagtaaaatattatttgaatagtaaaatagtattttaaataaatagtttaacgTTGAAACctgcactctgcttttgtgtctttatggtgaggtgtagtttatgtgcgatatttttaacatttcgtaaaaattatgtaaaagatccattatttcttcagcagcccCGTTGCGAACTCAAAACGAAACTTAAACGTTTTCCATTAGTTTTTTCGTTtacgatatatatttatattttgaattcaatatttacgGCACTAATTTGATCATACAGTCCGAGCCTTCTGCAGCACTGCGCCACGGCTCTGCAACGCACTTCCAGAGGCTGTGAGAAGCGCCGCTATGCATGCTAGTTTAAAGAAATGGCTAAAAAAATTAccctaaaaacattttaaggatctctgttaaTTGCTTGCTaccctgcttgttttcttgcttacttTGTCTTTTTACTGTCTTGCTTGAGTGTAGCGTGCGGGTATAAGACTgttatacataaaatgtataatatgaaaattaataatataatgtagttgaggaggtaaagaaacgtATAGCTTGAATGACACATACCAGTTCAAGAAACGGAAAGGCTGCACTTACTGtggttttaacggatccaaaGTGTAgtaacgataataataatactacgaAGTGCCATGTCGTTGACGGACACCTTTTCGGATGTCAGACTATAAATGCCGTGTCGGATCCAGTGCCACTGCCTGTACCAGCTGAGCTCTTCTTCCCTGTCCTCACGGCTCCAGTGTTTTCTCTTCAGTGCTCATGCATCATTGCCGCGCTCCCGCGCCCTGCGAGTTCAGCTCTGCTCATTGtgcagcaaactgtcttctGTGCAGTGTTCAGAGTACAGTGCTCCATACTTTAGAAGACTGTCACGGCTTTCCACTGGTGTAGCTGCAGCCGGCCCCGTCTttagggtttttttgtttttttttgtagctgcgcccggtagacccaactaatcgacGATGAAATTCGTTGCCaatgatttttaataatcaatGTAATCCATATAATCGATTAGTTGTTGCAGACCTACTTCAGACTATACTAAAAGGCACAAAAATGGGCTTTTACATTGAAGTTTATGATCTCTGTACATATTACAGTATATGGACAGTGCCAAGAGGGACTAACATGATGACACGAAGATCGAGACAGAAAGCAACTAAcatggggggagagagagagcagaaccCCTCCTCCCCCAAAATAACAGACTAGCATGGGGACAGAGAAAGACTAACATGGcatgagagagaggagaaaaacaggGACTAATACAAAAAGAGAGGTGCCAGGTTGACCCAGACCTGCAGCTCGGAGTGAATGCAGGCAGTGATATGTCCCTCAGAGTCCCGTGGGTAATCGATCTTCTCATGCACTTCAAAACACTCAACCTCAGCAGCTTGGAACTCTGTGCCTGCgaagagagagacaaaagggttaatacagtacagacactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagacacactgactgactggacactacagtacattaacactgcactgagagagagagggttaatacagcacagcacagacacactgactggacactacagtacattaatacTGCACATGGAAAGAACGAGTGTCCAATCCCTCCATGTCTAgaatgtaaaactgtaaaaactaaaatctgctCGCTTTGGTTTCATCAATCCAGTGTAATTGGCTCCAGATCCATGCTGTATTAAACCCCAATTGAGTTTCTGACTGCTTCAATGGGAAAATACTACACTACAGATGTAGGCTTTGACCACAGTGTAAAAACAGCATTGTTAAGTCTCTTTGCGGTTCCTAATACTTCTATACACCCCAGGCCCTGTTCAACTAGAACTTTGTAGGTTACGGTAGAGATTTTGCACCAGTTGTACGTCAGCCCCACAGACTGGCCTAGTTGAACACTAGTATTAGTACCTGTAGGTATCTGGCAGCTTGCAGTGACAGGAAATCAGTGGGCAAGCCCGCAATCAGGCAGCTCTGCGTGTTGGCGCTGGTGTTGTGAAGATCACAGATGAAGTCCACAGCGTGCTCCGATCCCCTTGGTCCGAAGGTCCGGTTCAGCTCTAGAGCTCTCTGTACCTCATAGGGACTGTCCACCGACTCACACTgactgagaggagagagatagCACAATACATCCGTAACTGTGTGAACACTATTGTGCATTAAAACTGACTcgagtacagtacagacacccTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123309 lncRNA downstream 67665 13261011 ~ 13262227 (-) True G98844
TU123294 lncRNA downstream 80609 13248836 ~ 13249283 (-) True G98836
TU123090 lncRNA downstream 805817 12523793 ~ 12524075 (-) True G98671
TU123081 lncRNA downstream 859452 12470098 ~ 12470440 (-) True G98662
TU123069 lncRNA downstream 871819 12457626 ~ 12458073 (-) True G98658
TU123470 lncRNA upstream 60718 13396647 ~ 13416500 (-) True G98950
TU123501 lncRNA upstream 128929 13464858 ~ 13519520 (-) True G98973
TU123527 lncRNA upstream 202598 13538527 ~ 13540957 (-) True G98993
TU123526 lncRNA upstream 203689 13539618 ~ 13539998 (-) True G98992
TU123574 lncRNA upstream 243796 13579725 ~ 13597723 (-) True G99002
AMCG00015589 mRNA downstream 18671 13285470 ~ 13311221 (-) True AMCG00015589
AMCG00015586 mRNA downstream 136411 13181838 ~ 13193481 (-) True AMCG00015586
AMCG00015582 mRNA downstream 221438 13098638 ~ 13108454 (-) True AMCG00015582
AMCG00015579 mRNA downstream 252137 13072507 ~ 13077755 (-) True AMCG00015579
AMCG00015578 mRNA downstream 274854 13039548 ~ 13055038 (-) True AMCG00015578
AMCG00015594 mRNA upstream 25495 13361424 ~ 13364977 (-) True AMCG00015594
AMCG00015596 mRNA upstream 33474 13369403 ~ 13409708 (-) True AMCG00015596
AMCG00015593 mRNA upstream 88540 13424469 ~ 13424876 (-) True AMCG00015593
AMCG00015595 mRNA upstream 90927 13426856 ~ 13432356 (-) True AMCG00015595
AMCG00015592 mRNA upstream 106662 13442591 ~ 13453776 (-) True AMCG00015592
TU122943 other downstream 1913230 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 1943693 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 2068724 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other downstream 2068724 11257278 ~ 11261168 (-) False AMCG00015535
TU122884 other downstream 2092042 11023169 ~ 11237850 (-) False AMCG00015532
TU123499 other upstream 122198 13458127 ~ 13459789 (-) False AMCG00015598
TU123543 other upstream 335386 13671315 ~ 13739119 (-) True AMCG00015606
TU123617 other upstream 505300 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 505300 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 505300 13841229 ~ 13864738 (-) False AMCG00015612

Expression Profile