RNA id: TU123633


Basic Information

Item Value
RNA id TU123633
length 1097
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G99049
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13883123 ~ 13884670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caagttcagaaaaataactttatttcaacataaaataCAGCATAACAGTTTTGCAAAAAGGAATGCGGTGTAATTCTCTCGCCACTCAACCAGTCTCTCATACCAGGGCAGGGAGGACATCAAAGGAATGACTGGAGGTCCCCGCTGGTCAGTCCTTGTCATAATGCACCTGGAACAGGGAATTCTGGAAGAGGATGGGCTGCTGGCCCGgggtcagtgtcagtgtgatgTCGAAGCTGCCCCTTCGGGGTTTCTCCGGGTTGCAGAGCACAGGCAGGTCAGGGTGCTGCTCCAGGATGGCCCCACGCAAcgcctctgcctgcctcccaaACACGCGTCAGCTCACactgcaggacagagagagacactgaagACACTCACACAATGAAATCCAGGACAGAGAAACTGCTGAGGAGACTAGCAGTCAATGCAGAAtgattgcaaaaaaaaatggGATTGCAGTGTAAAATGTGCCATACAGACTTCTTTaacaaataaagttaaaataactaaattagcTATCCTTGAATACACGCACAGATAAAGATGaccattttacattacattcagtATGTCTACACTTAATTCCATAAACACCACAATGCTGCATCGAGGACCTGTTGTGTAATAGAAAAGTGGCAAgtttgaaaatgtgcattttaacatattaaCTATTCTGACCTCTGATCTTCCCCCATCATGTTACAAGTCATAAGACCATTTTTAGACAAAGtcagttaaatattaaaatgtcctgtacatctcctcccccctcctcaatacacacaatgtaaagcCAAGTACAATAAGAATCacttggaaatattttttttagtgaAGGGGAAATGCGTGGAGAGATGGACCCAGGTGTAATGTCCGCACACTGGACACTGGCCACCGGACGAATCACAGGCACTGGACGCAGCATAACTAAGACAGCTCACCAGTGCTCGATGGTGATTCTCCGGCCCTCTGCTGCCCcctcctgcccgtccctcctgCCCCTCTCTTTCTTGGGCTGCTTGCTGGCAGTGTCCTCTGCCTGGGAAAAAGCCCCCTGCGGCTCCGGGGCTGCCCTGCGCTTCTGCCCCCTAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123556 lncRNA downstream 37446 13791048 ~ 13845677 (-) False AMCG00015606
TU123614 lncRNA downstream 42892 13834517 ~ 13840231 (-) False AMCG00015612
TU123615 lncRNA downstream 42892 13834517 ~ 13840231 (-) False AMCG00015612
TU123616 lncRNA downstream 43447 13834517 ~ 13839676 (-) False AMCG00015612
TU123577 lncRNA downstream 66596 13579725 ~ 13816527 (-) False G99002
TU123635 lncRNA upstream 16686 13901356 ~ 13902314 (-) True G99051
TU123639 lncRNA upstream 33405 13918075 ~ 13918324 (-) True G99055
TU123642 lncRNA upstream 40578 13925248 ~ 13931122 (-) True G99058
TU123648 lncRNA upstream 149588 14034258 ~ 14038303 (-) True G99063
TU123777 lncRNA upstream 177749 14062419 ~ 14218784 (-) True G99162
AMCG00015611 mRNA downstream 13133 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015612 mRNA downstream 32340 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015613 mRNA downstream 53401 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015604 mRNA downstream 122393 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015605 mRNA downstream 140888 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015614 mRNA upstream 172669 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015615 mRNA upstream 194824 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015623 mRNA upstream 212755 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015620 mRNA upstream 229324 14113994 ~ 14118650 (-) True AMCG00015620
AMCG00015621 mRNA upstream 237796 14122466 ~ 14128364 (-) True AMCG00015621
TU123617 other downstream 18385 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 18385 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 18385 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 144004 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 423334 13458127 ~ 13459789 (-) False AMCG00015598
TU123831 other upstream 441497 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 563041 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 596524 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 685981 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 689696 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile