RNA id: TU123962


Basic Information

Item Value
RNA id TU123962
length 1134
lncRNA type sense_over
GC content 0.44
exon number 5
gene id G99289
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14542961 ~ 14624486 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCATCTATCAGTGCAGTCATGATGctaTCGCTCAGTTCTTTCCACAGTGCTTCGTCCCCAGTCTCCAAACACCCCCCTGGTttaggagaggaggagaaggacgacgaggagagggagagagagagggaggagagggagagggaaaggcaAAGAGAGagagagagagggagagagaaagcgggttaatacagtacagcacagacgcactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagacacactgactgactggacactacagtacattaacactgcactgagagagagagggttaatacagaacagcacagacacactgactggacactacagtacattaacaNtgcactgagagagagagggttaatacagtacagacacactgactggacactacagtacattaacactgcactgagagagagagggttaatacagcacagacacactgactgactggacactacagtacattaacactgcactgagagagagaggagagagagcgagagacagagtgtccacacagtgcagtgtgagtgtgtcagaaagagagagactggtAGAGAAGGCAAGattgagggagggggggagtgaGTGCATTTTAATGATCGACACAGATTGTTTTCTAGCCAAGATCACATTTTAATAAGACTATCAAATACACAAGAAAGACTGCTGTAATAGAcacactctcaaacacacactcacaccctcaCCCTCTCTCATGCATGTGTGCGCGcgcgtacacacacacacacacacacacactcattctcgCTCTCTCCCACACAAACTCAGACTCATTCTCcctcacacacatactctcactgcagtaaaaaaacacacacaaaaattcccactaaaaataaaacattagtaaCCTATACACCTGCGCCATCCCCCCAATTCCttactttctctttctcctatTTTAAAAGAGGGGATCACAGCAGCTGgctaaaattgaaaacattctttctttctttatctctcAGGTCTTCTTCACAAAGGATAGTCATGCCACAAGCTAAAAGACAAAatcaaagaaatatattaataataatcataacataaTCAATGTTAAAATATGGAGTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123968 lncRNA downstream 45560 14502764 ~ 14503911 (-) False AMCG00015640
TU123859 lncRNA downstream 85311 14458465 ~ 14464160 (-) True G99217
TU123834 lncRNA downstream 228755 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA downstream 228755 14319467 ~ 14320716 (-) True AMCG00015628
TU123789 lncRNA downstream 443026 14105454 ~ 14106445 (-) True G99167
TU124033 lncRNA upstream 153944 14778430 ~ 14782267 (-) True AMCG00015647
TU124037 lncRNA upstream 164433 14788919 ~ 14789198 (-) True G99332
TU124051 lncRNA upstream 216150 14840636 ~ 14840842 (-) True G99341
TU124053 lncRNA upstream 255274 14879760 ~ 14880075 (-) True G99343
TU124114 lncRNA upstream 256168 14880654 ~ 14881619 (-) True G99390
AMCG00015641 mRNA downstream 29185 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015640 mRNA downstream 34192 14503504 ~ 14515279 (-) True AMCG00015640
AMCG00015635 mRNA downstream 75369 14468361 ~ 14474102 (-) True AMCG00015635
AMCG00015632 mRNA downstream 103453 14445353 ~ 14446018 (-) True AMCG00015632
AMCG00015634 mRNA downstream 105313 14436478 ~ 14444158 (-) True AMCG00015634
AMCG00015644 mRNA upstream 47725 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015645 mRNA upstream 56308 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015647 mRNA upstream 155783 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015649 mRNA upstream 296826 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015651 mRNA upstream 315560 14940046 ~ 14943540 (-) True AMCG00015651
TU123958 other downstream 66563 14481194 ~ 14482908 (-) True G99286
TU123851 other downstream 92776 14447711 ~ 14456695 (-) True G99213
TU123831 other downstream 214539 14326167 ~ 14334932 (-) False AMCG00015628
TU123618 other downstream 684733 13841229 ~ 13864738 (-) True AMCG00015612
TU124012 other upstream 65901 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other upstream 66384 14690870 ~ 14695370 (-) True AMCG00015645
TU124167 other upstream 478131 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 546129 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 634975 15259461 ~ 15260484 (-) True G99454

Expression Profile