RNA id: TU124114


Basic Information

Item Value
RNA id TU124114
length 569
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G99390
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14880654 ~ 14881619 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTAACTCAGCACCCCGAGCACCACCCCCACCTTAAGAGTCTCCCTTatttacagcacagacactCACTGTACACTGTCAGCTGGAACACTGTTGTGTCTGAGACGCTTCCTCCTGTGGCCTCTACTCTATATTCCCCAGAGTCCTGTGTGTTGAGCTGTGTGATGCTGAAGTATCCAGTGCTTCTGTCCCAGGTCACTCTGCCTCTGAAGCTCCCGAAATTTAGATCACTGAACTCTCCATTGATCACCTGAGCAATATTGTCATTGTCTTTAATTAAGAAGCCAATGTTAATCACTCTGGCATTGAAAGTGAATGGCTCTCCCACAGTGCCGATCACCCGTTGTACAGATTGCCCAGAAGACGCATGTATCcctgtaaCAGTCATGAAGacgaaaaacaaacagaaaaccaaCATTGTGCTGTTTTACACCACCCAGATAGGcgaaacattaataaaattgaACATCAGAAAAAGATTACTGTTACAAACACGGGAAAACTGCTTGCAAATCATATACcggaagtttatttttatttttccggGTAATGACTGTGTTTAAAGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124053 lncRNA downstream 579 14879760 ~ 14880075 (-) True G99343
TU124051 lncRNA downstream 39812 14840636 ~ 14840842 (-) True G99341
TU124037 lncRNA downstream 91456 14788919 ~ 14789198 (-) True G99332
TU124033 lncRNA downstream 98387 14778430 ~ 14782267 (-) True AMCG00015647
TU123962 lncRNA downstream 256168 14549471 ~ 14624486 (-) True G99289
TU124121 lncRNA upstream 21082 14902701 ~ 14902927 (-) True G99395
TU124122 lncRNA upstream 24362 14905981 ~ 14907325 (-) True G99396
TU124142 lncRNA upstream 99672 14981291 ~ 14983572 (-) True G99410
TU124144 lncRNA upstream 111287 14992906 ~ 14996764 (-) True G99411
TU124145 lncRNA upstream 113919 14995538 ~ 15052530 (-) True G99412
AMCG00015647 mRNA downstream 85229 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015645 mRNA downstream 187373 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015644 mRNA downstream 204662 14672211 ~ 14675992 (-) True AMCG00015644
AMCG00015642 mRNA downstream 304839 14571978 ~ 14575815 (-) False AMCG00015642
AMCG00015641 mRNA downstream 360368 14517458 ~ 14520286 (-) True AMCG00015641
AMCG00015649 mRNA upstream 39693 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015651 mRNA upstream 58427 14940046 ~ 14943540 (-) True AMCG00015651
AMCG00015652 mRNA upstream 67624 14949243 ~ 14955830 (-) True AMCG00015652
AMCG00015655 mRNA upstream 212501 15094120 ~ 15108025 (-) True AMCG00015655
AMCG00015659 mRNA upstream 288997 15170616 ~ 15200791 (-) True AMCG00015659
TU124012 other downstream 142380 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other downstream 185284 14690870 ~ 14695370 (-) True AMCG00015645
TU123993 other downstream 303021 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 307565 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 397746 14481194 ~ 14482908 (-) True G99286
TU124167 other upstream 220998 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 288996 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 377842 15259461 ~ 15260484 (-) True G99454
TU124288 other upstream 819459 15701078 ~ 15703290 (-) True AMCG00015666
TU124430 other upstream 1135964 16017583 ~ 16102456 (-) True G99605

Expression Profile