RNA id: TU124142


Basic Information

Item Value
RNA id TU124142
length 575
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G99410
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14981291 ~ 14983572 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGAATTCATCGTaacatgtttgtgtatgtggGATGTTACTGTTTTTCACAAACTATACACAGGATTCACAGcccctgtgcCGCCAGTTACGGGGTGGCCGCTGCCGGGACAGTGCAGGAGAGAGGACGGGCCgagcagaggaggaggggagcgAACTGCGAGTCGttagaatgaaaaaaggaagaaaggctttgctttttaaaaatttcACTGTTGATTcgctggttgtgtgtgtgttttaatccgttttaaactttgtattttaattgattttaaagaacaaaataaaacctgtatattgattttaaagaacgaaatgatttatatttaaaatcgTCTATCTGCTGTATGTTTTAAGTGGGAGGTGTTAGAAAGATGGGTGGGCCTTTATATAAGTCCCTGTACTTCCAAGGTTGGGAATTAAACTGTTGAGTCTGTCGGTGTGAGCAGAGCAGGCGCACTTTAAATAATGGGATACATTTGTCTCCTTCTGCTGTACCTCTCCTTTTATGGCATCAGCTCGTCTTCCCCTCAGTCTGCAGTGAGGCTGCAGGGCGCTGTGGGGGGGGCAGT

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124122 lncRNA downstream 73966 14905981 ~ 14907325 (-) True G99396
TU124121 lncRNA downstream 78364 14902701 ~ 14902927 (-) True G99395
TU124114 lncRNA downstream 99672 14880654 ~ 14881619 (-) True G99390
TU124053 lncRNA downstream 101216 14879760 ~ 14880075 (-) True G99343
TU124051 lncRNA downstream 140449 14840636 ~ 14840842 (-) True G99341
TU124144 lncRNA upstream 9334 14992906 ~ 14996764 (-) True G99411
TU124145 lncRNA upstream 11966 14995538 ~ 15052530 (-) True G99412
TU124162 lncRNA upstream 69724 15053296 ~ 15181986 (-) True G99424
TU124171 lncRNA upstream 141063 15124635 ~ 15126671 (-) True G99430
TU124192 lncRNA upstream 266329 15249901 ~ 15252717 (-) False AMCG00015660
AMCG00015652 mRNA downstream 25461 14949243 ~ 14955830 (-) True AMCG00015652
AMCG00015651 mRNA downstream 37751 14940046 ~ 14943540 (-) True AMCG00015651
AMCG00015649 mRNA downstream 53186 14921312 ~ 14928105 (-) True AMCG00015649
AMCG00015647 mRNA downstream 185866 14780269 ~ 14795425 (-) False AMCG00015647
AMCG00015645 mRNA downstream 288010 14680794 ~ 14693281 (-) False AMCG00015645
AMCG00015655 mRNA upstream 110548 15094120 ~ 15108025 (-) True AMCG00015655
AMCG00015659 mRNA upstream 187044 15170616 ~ 15200791 (-) True AMCG00015659
AMCG00015658 mRNA upstream 252562 15236134 ~ 15244894 (-) True AMCG00015658
AMCG00015660 mRNA upstream 266405 15249977 ~ 15252721 (-) False AMCG00015660
AMCG00015662 mRNA upstream 354464 15338036 ~ 15339062 (-) True AMCG00015662
TU124012 other downstream 243017 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other downstream 285921 14690870 ~ 14695370 (-) True AMCG00015645
TU123993 other downstream 403658 14574366 ~ 14577633 (-) False AMCG00015642
TU123992 other downstream 408202 14570651 ~ 14573089 (-) True AMCG00015642
TU123958 other downstream 498383 14481194 ~ 14482908 (-) True G99286
TU124167 other upstream 119045 15102617 ~ 15189394 (-) True G99426
TU124175 other upstream 187043 15170615 ~ 15171672 (-) False AMCG00015659
TU124200 other upstream 275889 15259461 ~ 15260484 (-) True G99454
TU124288 other upstream 717506 15701078 ~ 15703290 (-) True AMCG00015666
TU124430 other upstream 1034011 16017583 ~ 16102456 (-) True G99605

Expression Profile