RNA id: TU12929


Basic Information

Item Value
RNA id TU12929
length 736
lncRNA type sense_over
GC content 0.33
exon number 1
gene id AMCG00016024
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2532617 ~ 2554946 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGTACATAAAACCAGTCTAGTTTTTCAAAATGCCCTTTTTTCTCTTCGCTTAGACAACATTAACTAATTCCGTCACCCTCTCAAAACAAGaatggtgtttgtgtttctcatttaaaatacatccatgGTTTATATAGGACTGTTTCACCCAGCTTGGaatttttccatattttcacAACCtgaaatttataaaaatataaaagacatGGTTAGAGGTTACATCGTGGTTAAATGTCATGGTATTCACCcctcaatacttggtagaaacACCTTTGGCAGGAATTGTAGCGCTGTGTCTTTTGGGGTAGGGTTTTCTCTGTTTGCACATTGTTCAATATTCTCCCATTCTTCATGGCAAAAATTTTCAAGCTGTGTCAAGTTGGATGGTGATCATTGGTGGACAGTAATCTTCAAGTCTTGACAAAGATTCTCAATCAGATTaaagtctgggctttgactaggccactctaggacattcactttcttgcttttaagccactccagtgttgctttggctgtgtgcttggggttaTTGACCTACTTACTGTTTGTATACCCCTCTCTTGATCTGTGcatttccacaactttatcctgcaattgttttgaaagctccttggtgttGGCATTTTAAAAGGTGGAACTCCGCCTCTGACACAGGGGTGAAGTGGAGCCGGGCGGAGCGGTGCTACTCATTCAATCCCATGCTCCTCAAttctgaatataaaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12889 lncRNA downstream 107861 2425021 ~ 2425480 (-) True G10357
TU12875 lncRNA downstream 275626 2257416 ~ 2257715 (-) True G10346
TU12872 lncRNA downstream 282700 2250401 ~ 2250641 (-) True G10343
TU12853 lncRNA downstream 445791 2087271 ~ 2087550 (-) True G10324
TU12850 lncRNA downstream 614005 1918429 ~ 1919336 (-) True G10321
TU12949 lncRNA upstream 162593 2696669 ~ 2702512 (-) True G10415
TU12966 lncRNA upstream 202105 2736181 ~ 2736474 (-) True G10432
TU12969 lncRNA upstream 215582 2749658 ~ 2749864 (-) True G10435
TU12977 lncRNA upstream 231418 2765494 ~ 2767457 (-) True G10440
TU12994 lncRNA upstream 250049 2784125 ~ 2846357 (-) True AMCG00016029
AMCG00016022 mRNA downstream 6064 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016023 mRNA downstream 18261 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016019 mRNA downstream 1073509 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016020 mRNA downstream 1192130 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016018 mRNA downstream 1221256 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016026 mRNA upstream 61938 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016027 mRNA upstream 72632 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016028 mRNA upstream 180893 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016029 mRNA upstream 251076 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016041 mRNA upstream 929590 3463666 ~ 3475993 (-) True AMCG00016041
TU12954 other upstream 176323 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 500346 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 995176 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1373683 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5657470 8191546 ~ 8194432 (-) False G11326