RNA id: AMCG00016200


Basic Information

Item Value
RNA id AMCG00016200
length 2499
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00016200
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11868787 ~ 11886193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGGACTGGGAAATGTCACCGACCCCAGCTGCACCCAGCAGCCCCCGCTGGCTATCGACATCATTATCCCTGGGACAGCCTGCTCCGTGCCCTGCTCCGTGCCCTGCCCCTGCTCCGTGCCCTGCTCCGTGCCCTGCTCCGTGCCCTGCCCCTGCTCTGTGCCCTGCTCCGTGCCCTGCTCTGTGCCCTGCTCCATTCTGCCTGTCATTCTGCCCACAGATCTGGATATCTTTGGGATCATTCTGTATGCAGTCCTTACCCTGATGGCAGTGCTGTCTGTGCTCATATACATGGAAGAAGCCATTTATATCTATAAAACAGTTCCCTCTCCTAAGAAATCGGCCATTATGTGGGTTAATGGTGCAGCACCTGTCATCGCAGTAACATCTTGCTGTGGGATGTGGATCCCGCGTGCCACCATGTTTACAGACTTCACAGCTGCTACGTACTTTGCCATTGTCATCTACAAGTTCCTGGTGCTCATGATCGAGGAGTGCGGAGGGGATGAGGGCTTTTTAAAGCGCTGTGGCCAAAACCGCCTGAAGATCAGTACGgggccctgctgctgctgctgcctgtgCTTACCGTTCGTTGGGATCTCAAGACGAACCCTGTTTCTGCTGAAGGCAGGATCTTTTCAGTTTGCTTTCCTGAAAACAGTCTTCACCATTCTCTCCATAGTACTCTGGACCAACGGGAACTTTGACCTCGCTAATCTATCTATGAATAGTTCTGCTATATGGATAAATCCTTTTGTTGGGATCCTCACTATCATCGCGCTTTGGCCCGTCTCCATGGTGTTTAAGCATGTCCAAGGGCTGCTACGCAGTCAGAAGATTATCCCCAAGTTTGCCATGTATCAGtTGGTGCTGATCCTTAGCCAGCTTCAGTCGGCCATCATTAACATCCTTGCGATGGCAGGAACAATAGCCTGCGCTCCTCCCTTTTCCTCTGTGGCTCGGGGCTCCTTCATGAACCAGCAGCTGTTAATTATGGAGATGTTCATCGTCACGCTGGTCACCAGGATGCTGTACAGGAGACGGTACAAGCCCCTGGACGACTTGGACAAGCACGCCGAGGACAACGAGGGCAATGCCAAGATCCTGCTGCAGTCCGAGTGTGGCGAGGACGGCGTGCAGACGGCTTAACTGTGGGCCTCTGCAAGGAGCCGCACCATAGAGGAGACTGCGCGCACACTGGTGTTACACTGTTCCTGCGTTTGGTGTTAGGACCTGTTCAGTCTGCCACAGAGTTGGAGACGAGCAACATCTGCAGAAAAGAACCTCAATAAGTTCACTTTTTCTGACTGGCTGTATTCTGCCTGTGAGTTGATGTTAtgaagttgtgtgtgtattattttttaatacgtTAAGTACAAAAGCCCAGGAAGTGAACATGTTTTAGGAATTTGCCATGGCTgactacaaaaacatttaacctATATAGGCTGTATTAAGCGAATACAATACAgggttttctgttattttatgtagAATACGTTCTTCTCCTATATTCCGATACAACATAgaagattgcatttttttttcttgtttatgtttatCATGTTCAGTTTTTTCCTATCTCCTATGCTCCTATCTATGCTGGCATCAAACCATTTCCCATATTTGGAtatggacattttaaaatatatttataaaacaccaTTTAGTTATTAAGGCTGTATCAAATATTGTATCTACTCATTAATAGAGTTCACTGTGCTGCAATGAATCCAAGAAATTATACTTGGTcaaattgttaaatgtaattttgtcaGGTTTCTAGCGTATGCTGGCACTGGGTTAATCTCAGTAACATTGTATTGGAGAACAAAATACAGTTCTCTATTATAATGGAcataatgtctgtttttaaaacctcAAATATAAACTCTTTTCATATGTTGGAATGGaaggtgtgtgcgtgtgtgtgcatttttggAAGTTGCTGGGTAGAGAGTACAAGAGTAGTAGTCTATATAAAAGTGATACACAgatataaagtatttttataatgCCAGTTTGGTGTACAGGTGCAATTATGACTTGTGTGTACTAACAGAAAAAATGGAActagtaaaaatatatttttaaaaccaaacattCTTGCTTGTTTAGTGCGTTTATTTGATAACATAATGTCAACATACCTTTTTGAGCCAATAAAGACAGAAGCGTTGGGACAGAACAATTGGCACTGACCTTATTTGTACTACATGTGGAGGaccttttttaataaatgtaaaacacctattcaggttttgttttttttatatataaataataatatgtttgtaAACAGTAGGATGTATAAAGTGATATAGATCTTACCGAGTTAAACACAGATAACACATTTGCATCCCTTGTTTTGCTAAAGATGTtgattttctcatttttttaatggactCGTAAAATAGAGAGTGATGTTgataaaactacacaactgctgaggtaataaaataagtgaaaataaatacatttaaaaaatcaacaagA

Function

GO: NA

KEGG:

id description
K14360 OSTALPHA, OSTA, SLC51A1; organic solute transporter subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14679 lncRNA downstream 102210 11766152 ~ 11766577 (-) False AMCG00016194
TU14659 lncRNA downstream 130188 11738345 ~ 11738599 (-) True G11865
TU14652 lncRNA downstream 151370 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA downstream 151370 11711284 ~ 11717417 (-) True G11858
TU14598 lncRNA downstream 384994 11483562 ~ 11483793 (-) True G11814
TU14773 lncRNA upstream 4795 11890988 ~ 11907969 (-) False AMCG00016203
TU14816 lncRNA upstream 352592 12238785 ~ 12239014 (-) True G11996
TU14864 lncRNA upstream 466967 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 468482 12354675 ~ 12355364 (-) True G12046
TU14892 lncRNA upstream 501605 12387798 ~ 12391408 (-) True G12058
AMCG00016199 mRNA downstream 1918 11848284 ~ 11866869 (-) True AMCG00016199
AMCG00016201 mRNA downstream 32366 11818088 ~ 11836421 (-) True AMCG00016201
AMCG00016194 mRNA downstream 87240 11766442 ~ 11781547 (-) True AMCG00016194
AMCG00016195 mRNA downstream 138990 11719415 ~ 11729797 (-) True AMCG00016195
AMCG00016187 mRNA downstream 205952 11647731 ~ 11662835 (-) True AMCG00016187
AMCG00016203 mRNA upstream 4795 11890988 ~ 11904834 (-) True AMCG00016203
AMCG00016204 mRNA upstream 19883 11906076 ~ 11943652 (-) True AMCG00016204
AMCG00016208 mRNA upstream 321955 12208148 ~ 12236522 (-) True AMCG00016208
AMCG00016210 mRNA upstream 378081 12264274 ~ 12296060 (-) True AMCG00016210
AMCG00016209 mRNA upstream 410660 12296853 ~ 12320656 (-) True AMCG00016209
TU14520 other downstream 1020976 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1020976 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3674355 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7948363 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8329594 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 436968 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 975906 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 975906 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 983647 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1668392 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile