RNA id: AMCG00016209


Basic Information

Item Value
RNA id AMCG00016209
length 8853
RNA type mRNA
GC content 0.51
exon number 41
gene id AMCG00016209
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12296853 ~ 12320656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAAACGGGCTGAATAGCGAGCGGGAACAACCGAGGAGGGGGTCAGAGCGGTGCAGccgaaaataaatatatatctggtAGATAATCAGCGAGTAAGACCTGACACTGCAAACACCCAGTAACAAAAGCCATGGCCGACACAACGGCCCCCAGCCCGAGTGTCTCGCTCCTTGAATCGGCCCGGGAGTTGGAGGAATATCAGCTTCTGCCCAGACGGTTGGACTGGCACGGGAATGAGCATCCTAGGACCTACGAAGATTTGgTTCGTGCGAATAAACATGTGGCACCGGATCACTTGCTGCAGATCTGCCGACAGCTCGGGCCACTTCTGGACAAAGAGGTCCCGTCGTGTGTCCCAGGCGTGTGGTCCCTGCTCGGGACAGGGAGGCACTCTCTTCTGCGCGCTGCTAAAGTGGAGGTTTTCCGGGGGAGAGAGCTGACGGGCACAGAGCGTTTTAGTTCTGCGTTTCCTGTTGGCAACTACCAGCACATGAAGATGCACAGGAGAACTCTTGGTCACCTGTCGGCCGTGTACTGTGTTGCATTTGACCGCACTGGGCTCCGCATATTCACTGGCTCTGATGACTGTTTGGTGAAGATTTGGTCCTCTTTTGATGGTAGATTACAGTCTACCCTGAGGGGCCATTCGGCAGAGATCTCTGACCTGGCCGTTAACTTCGAGAACACTCTTATAGCTGCAGGCAGCTGTGACAAGACTATCCGCGTGTGGTGCCTTCGAACCTGTGCCCCTGTGGCGGTGCTCCAGGGCCACACTGGCTCCATTACCTCCCTACAGtTCTCCCCGTTTGCCAAGGGCTCGGTGAGGTACATGGTGTCCACAGGGACAGACGGGACAGTTTGCTTCTGGCAGTGGGATGTAAATAACATGCGTTTCATCGATCGTCCGCACAAGTTTACAGAGAGACCCAGGCCGGGCGTTCAGATGATCTGCTCTTCGTTCAGTGCTGGTGGCATGTTTTTAGCAACTGGAAGTACTGACCATGTCATCAGAATGTACTACCTGGGCTCTGGCAGTCCTCAGAAGGTTGCCGAGCTTGAGGCCCACACGGACAAAGTTGACAGCATCCAATACTGCCATGCAGGAGACAGGTTTGTGAGCGGAAGCAGAGATGGCACCGCTCGGATATGGCGACTGCATCAGCAACAGTGGAGAAGCGTTTTACTTAACATGTCAACCAACCTAGCTGGGGCCGAGCCGGTGTTGAACGAGGAGACCTTTTTCAAGTCGAAGGTGACGATGGTTGCGTGGGATCGCCATGACAACACAGTCATTACAGCTGTCAATAACCATCTCCTTAAAGTGTGGAACTCCTACACCGGACAGCTGCTCCACATCTTAAAAGGCCATGAGGATGAGGTGTTTGTGTTGGAGCCACATCCCTTTGACCCCAGGATCATGCTCTCTGCAGGGCATGATGGGAACATCTTCATATGGGACATCATCCGTGGCACTAAAACACTGCACTACTTCAACATGATTGAGGGGCAGGGTCACGGGGCGGTATTTGACTGCAAGTTCTCGCCAGAAGGCCAGCGTTTTGCCTGCACAGACTCTCATGGACATCTGGTTATATTTGGGTTTGGGTCCTCGAAGCCGTATGAAAAGctcCCAGATCAGGTGTTTTTCCACACTGATTACCGCCCGCTTATCCGAGATGCGAACAATTACGTGCTGGATGAGCAGACCCAACAGGCTCCCCACCTGATGCCGCCTCCCTTCCTGGTAGATGTGGATGGAAACCCACACCCCCCCAAATACCAGAGGCTTGTCCCTGGGAGAGAGAACTTCACCGACGAGCACCTGGTGCCCCAGCTGGGATATGTTGCAACAAGCGATGGGGAAGTGGTGGAGCAGGTGATAAGCCAGCAGACCAGTGACCATGATGATGGGGCCCAGGAGCCAAGTGTTCTGGATGGCTTCATCAGGCAGCTGCTGGACCAGCAGGACCGGCAGCATGCAGCAGAGCCGGGCACCCCACGCAGAGTGTTCCGCAGTCAGAGCGTGGAGGTCCAGTCGTCCCCGAACGTGGGTCTGCGGCGCAGCGGGCAGGTGGAGGGGGTGCGGCAGATGCACCAGAACGCTCCACGGAGCCAAATGGCCACCGAGAGAGACCTGCAGGCATGGAAGCGGCGAGTCGTGGTGCCAGAGATGTCTTCCAGCGTGCATCGGAGACAAGAAGACTTCAGAATTGCAAAAGGAGATGAGGAGATTGCTCTCTTCTCTTTAAGGAAAAGGAGAGTATTGCACGCAGCTTCAAGGGATGATTCAGATGATGAAATGGTGTCCAGCAAACGAACACAGTCCCGCAGAGCCCGGGCGAGGAGCATTCGGACCCGTAACGCATTGGCTGAGGATTACATTGAGTATTCCTgcgaggagggggaggagactGAGGCCTCGGGGGCTGAGGAAAATGAAACTGAAGGCAGCGCAACACCAGCCTCTTCcaatgaggaggaggtggaggagtgGAAGAGCGACAGCTCAAGCAACTCCTCCAGCGAATACTCGGACTGGATTGCCGACGCGGGAATCAACCTACAACCGCCCACCCGCCTCTCCTCCCGACGACGCGTCAGGCGCCACATCAGCAGctccgaggaggaggaggaggaagaggaggagccaCAGGACGAAGAGGAGCACCGGCCACAGCCTCCTAAACCGAAAAAGAACAGGAATAAGATGCCAAAGCGGTCCAGTCAGAGACCATTGTTTAACAGGGAAGTTTCAAACGAGTTTCGTCCGTCCAATTGGATTACAGATGTCATTCCACGGAAGTCTCCCTTCATTCCCCAAATGGGCGATGAGGTGATCTATTTCCGCCAAGGCCATGAGGCATACGTGGAAGCGGTGAGAAGAAACAACCTTTACAGTTTAAACCCTGAGAAGCAGTCATGGAGAAAGATGGATCTCCGGGATCAAGAGTTTGTTAAAATCACTGGAATCAAGTACGAAGTGTGCCCTCCAACACTGTGCTGTCTGAAGCTCTCGCTCATTGACCACGGCACGGGGAAACTCACAGACAAGTCCTTCTCTGTTAATGAACCAGTGGTTTACAATTTGTGGAATATACCAACACTTTTCAGATATCATGACATGCCTGATGTGATAGATTTTCTGGTGCTGAGGCAGTGCTATGAGGAAGCACGGCAGAGAAACTGGCAGCCAGATGACCGCTTCCGATCGGTGATTGACGATGCGTGGTGGTTTGGGACCATAGTGTGTCAGGAGCCCTACCAGCCCGAGTATCCCGACAGTCACTTCCAGTGCATCAAAGTCCGgtGGGACAACGGTGAAACTGAAAAGCTCAGCCCCTGGGATATTGAGTCTATTCCACAAACAGCTCAGCACCCCGAGACTGTGGGAGGAAGCGTCCCTGTGACATCGGAGGAGATGAGTGAGCTGATGTACAAACCACAGGAGGGCGAGTGGGGCAGGAGGATCCGGGACGACGAGAGCGAACGCATTGTGTTGGGCATTGATCAGCTCGTGGCTCTTGACATCGCCGGCCCCTTTGTTGCTCCAGTGGACATTGTTCAGTATCCCAGTTACTGCACAGTGGTGGCATATCCTACAGACCTCAACACCATCAGAATGAGGCTGATTAACAGATTTTACAgGAGGATCTCTGCTCTAGTGTGGGAGGTGAGATACATCGAACACAATGCCAGGACCTTCAATGAACCAAAGAGCAAGATTGCACTGTCAGCCAAGAAGATCACGGACATCCTCCTGAAGTTCATCAACAAACAAGACTGTACTGATATTATGGAGGTCTATGGAATGGCCGAAGACGTGAGTTGCTCTGAAGAGGACACTGATGCACCTGGAACCTCATCAGGGAGGAGTCTGCGCCCGCACGATGCAGAACTGGTATATGATGTCGATAACTGGAAGGAGAGATGCAAGGGCCTGCTGGACTATATCCTGGAGTGCGAAGACTCGGAACCGTTCCGCCAGCCGGTGGATCCCGACATCTATCCAGATTACAGAGATATCATCGATACTCCAATGGATTTTGGGACGGTGAAGAGGACCTTGGAAGAAGACAAGTACGAGAACCCGACGGAGCTTTGCAAAGACACCCGTCTGATCTTCTTCAATGCAAAGGCCTACACGCCAAACAAGCGTTCTAAGATCTACAGCATGACTTTGCGTCTCTCTGCGTTCTTTGAGGAGCGTATCAGGATGATCATCTCAGACTACAAAACGGCCCTGAAACACAGCGCGAAGCTCCGCCGCAGCCAGAGGTGCAGGAAGAGGCTGCAGCACCGAGAGCCCTCAGTCACCAGCTGTCACACTTCCAGTCAAAAAAGGAAGTTGGTCAAAACTCAGGAAAAAACGGAAACGTCATCAAAGTCTTACACAAAATCTACCTCAGCCAAAGTGTCTGCCAGTGCGAGACGCAGAAGAAGGGGTGCCATCAGTTTCTCGGGCAGCTCCTCCAGTGAAGACTCTTCAGTGTCCTTTAAATCCCACACCAAAGCCACAGCAGTGACCTCAGGAAGCAACACTGAAGAGTCCACATCAGCCTCCGAGAGCGAGATGTCCACCAGTGTCTCTGAGGACAGTGAGGACAGCAGGGGGAGAGGAGCTGGGGCCCGGGGCAGCAGGGTGACCCGGAACCGGAAGAAGCCAGTGTtggagagcgagagcgagatgTCCACTGCTGTCTCGGAGGACAGTGAGGACAGCAGTGCCCAGGCCTCTCGTCGCCATCGGAGGAGGGAGACTGGAGTGGCGGTCAGCCAAGCCAGCAGGGTGACCAGGAATAGGGCTGCCGCGGCCAAGAGAAAGCAAGAGAGTGGAGCTCAGGTAAACGGCCACAGCAGGAGAGCCTGCCGGGGTAAGAGGAAGTGGGGCAGTGACTCTGAGAGGGAGGATCCTGCTCATCCAGACACCGNNNNNNNNNNGAGGGAGGATCCTGCTCTTCCAGACACcgagagtgagagtgaggagGAGGGTGCCCGTAGGAGGACCTCAGCCAGGAAGACTGCTGTGGCTGCGGTCAACAAGATGAAGCTGATGAGCGCCACGGAGGAGGAGCAGGACTCGCCCTCAGAAAAGGAAGAGCACCGAAAAGCCAACGGCGGTCCGCCTCTGCGCACGGCAAGCAAACGCATCCCGAATATAGAGAGCAGCTCTGAGGACGAGGAGCTGTCTTCCCGACAGCAGCTGCGTTCAGAGAAAGGAGACTcggaggacagtgaggggagcaGTGGTTCTCGCTTCTCTTCTCGGCGCCGTCTGAACGGGGAGAGTAAAAGGCCAGGGAGCCGCAGGGGCACCAGGACGAGGGCTGCGCGGGACGAGGCCGAGCAAGAGAGTGGCGGTCAGGTGAACGGCCACAGCAGCAGGACTCGCCGGGAAAAGAACAGGAAGGGGCGAAGTGACTCTGAGAAGGAATCTCCTCATCCAGACTTTGGCGAGGAGCAGAGCATCGGGAGGAGGACCTCGACCAGGAAGACCGCTGTGGCTGCGGTCAACAAGATGAAGCTGATGACCGTCACTGAAGAGCAAGAGCCAGAATCCCCGTCTGAACCTGGAGAGCACCAGCGGTCCCGGGATAGCTTTCCTCTCCGGGCAGCTAAAAAGAGCACCCTGAAGGTGCAGAGTAGCTCTGAGGAGGAGTCTGCCCAGTCTGAGGGCAGCAGCCAAGAGGACCTTCAGCGAAATGGGCGGAAGATCAAGCCGAGGAAGGGCTGTAAAGGATCTCTCTCTGACAGCGAAGAGAGTGTTCATAGCCATAAGGGGAAAGTGTATCCACGAAGTAGAGTTCCATTAAAAGGTCAGGGTCCAGAATCCGGCTCTGACGCAGGCAGTCCAAACCCCTCCCGGTCGAAAAGGTCTGCGGCTGCAGCTTCGAGATGGAATGCCATTGAATCGGAAGAGTCGACTAATGACGAGGCAGAAGAACCGTTCTCAACCGGGAGTAAGGAAACTGGGTctgaagatggcaaatgtcggGAAAGAAAAACGTCCAGAGAGGAAAGCCTGGTGTCCCGagccaaaggcaaacaaagAAGTAAACCGGGCTCTGATTCAGCTGCAGAAGAAGCTGGGGGGAAACAAAGAGCACCAAGAGAATGGGACCCTGAAATGGATGAGCCCAGGCAGCGTATGAACCGATCTATACGGGTCGGTAAAGGCAAATCCTCTCTGGCCAGAATAGAGGCCTCTCAGTCTGAGAGCGAAGAGGTGGAGGACATTTCCCCTAAAACTGGATCTGTTAGGAGAAGAAGTAAGAAAGCATTCAGCGAGTCTTCTGAAGAACAGTCAGAGAGCGCAGAGACCTCTCCACTTCAGAGCAGAAGGGAGAAGGATAATTGTGCTTCCAGGAAACACTGTGACAAACGGGGTGCTGCTAGTGTGGAGGCTGCAAGCTCTGTATACAGAAAGAAACCTTCCAGTAACTCGGAAGATACGCGGTTTGATCCTGAAGCAAATGGTCAGAGTGTCCACAGAAAATCCAGTCGTGTGTGCAGGAAAGCAATTGCAGAGAGTGATTCCCTGGAAGAAACGGTTCCCAGCAGGAAAGTGAGTCTTCGAGATCTGCCTAGAAGGAAGTATGGCACGGAAGACTCTGAGGATGAATCGTTACAGGAAGAAGAGCAATTGgagaacaggaaaaaagcacAGAAGACTGCCTCTGTACCAAAAGAGACATGTCAGTCTGATAGAGAGTTAAGAGAGCGCAAGAGGAGCCCAAGCCATAGAACCACTGCCAGGAGAAAGCGCATCCATTCAGACGACTCGGAGGACGACTCCCAAGCTCGTGATTTTGATGCTCCCtcagagagaaatggagaggtAACTGGGAAAAACGTGAGAAAAAAGGGCTTCCAGGAAGAATCGGTGAGTGAGTCGGAAGCAAAGCACAGAAACAGTCAAAGCCGTCTTCCGCTTGTCCAGACCGAGAAACGCTCTGAGGGAGACTGGTCCTCTTCGAGGGCCAGCCCGTCATGCTCATCTTTGACTTCCACAAGCCCAAGCAAAAGAAAGCGTCCAGGCAGACCACGGAGGaaggaggacagcagcagcgcagTGTCAGGCAGCGATGAAAACGATTCTTCCGCTTCAGGGTCGGAGTCTCCCGGTTCAATTTCAGACTCCAAGGGTCGCAACACTGCAAACCACTCCAAGACTGGCGCCTGTAGACAGGGCAGAGCCAGCGATCCAGGTGCTGTCCGGCGCtctgagagaaagaggaggaaacTTTCTTGCGAGGTTGAGAGCGATGATTGTGAAACTGGCTATGGAAAGCCGCATCGAGGCATTCGCATCAGGACAAGATACCGCGGCAAGCAGACTGTATCGTATCTTGACAGCGAATGATGGAATCGTTAATGGGGTTAATGTCTGCCTTTTTCTCAGTCCCTAATTTATTTGACACCTTGAAGACACTTGATTGTCATGAAAAGGTTGTAGCATCGAAATCCTTTAGCAAATGCTGTGAATATGTTTCATTCAGggataatatttatattttctatgaaaaaaaaaaagtttataaaatgtatgaactGTTAATAAGGCATTTAATTGCTGTTTTCACAAGGGTTAGCACAGATGCCATATTGTGCCTCGTTCTTGGGGCAAATCTTTAAATATGTCCAGAAGGTTAACCCAAGCAAAAACTACTTTTGTTCACTTTCTGCTTTTGTGATTTGGCCAGCTAGTCAAAAGTGTGTGGGAAGCATTAGCAGCTTGGGTGCTATCTTAATAATATACCTCTTTATGATTAATTGGATCTTGCTGGCTTACActaaaatgcatactgtataGAGGTATTCCATATGCTGGTCTTGCATTAGAAACTCAGGGGTCAAAGAAGTTTACTGTAGTCTTGTTCTTGCATTTatgttaatatgaattaataaaatgacgCAAATGTTTCCAACATGTTGCAGTTCAAACCCACAAGCACTGGCCTTGAACAAACCCACTCCACCCTCCACACATCTCTTGAAAGCCAGGAACTTTGTAAACTCTGTGATTGCTCCATAGAGatgtattaaattatgaatatgagCCAAATTGTACAAACATTGAgcccctcttttttttctttctttcttgggcATATCAGGACCTTTGAAAAGGTACCTTTGGTTCTATCACTGATTGTTTTGTCTGGAAACTAAATGGGCAGATGCCAGCTTACATGCAGAACTACAATGCCATagtaatactttattttaaaatagaatagCTTATGTTTAGGGTGAAGTGCTAAAGATcagtaaaatacttttctcaAACTAGCTACTTGTGTGGATAGACTAGAACATCAAAGTTCTGcaagctgattttttttttttttcctttactggTTTATCGTTGTGATGTAGACTTGTTGCGTTTATCATATTAGTTGGTAATTTAACTTAAAAACTTGCCAAGTGCAaacatgattttattaattttcttccCATTTTTTCCCCTTGGTTCCTGTGGCAAATACTGTTTCTCATATTGGGAAGATGTTTTTGGTGTAGTTCTTTCAGTATTAAAATTCCTGTTCAGACCTAACCTGAAACTTATACTTAAACCATAATTACTGTAACTTGGGTTTCTTGATTACATAATTTAAGAAGACTGATACAgtgttgaaaatatttttttgttttgttaatgataaaggataacactttatttttagattaatttcttttttatttggtgtTCCGTGTTTAAGTCAAATGAATTCCAGTCTACTCATCATgagttttgttcattttacatCTCATAAATGGATTTTGTGTCAACAGATGGCCATGGTGAAACGGGAGCTTGTTTTGGgctaataaaatcacatttgccAAA

Function

GO: NA

KEGG:

id description
K11798 BRWD1_3; bromodomain and WD repeat domain containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14816 lncRNA downstream 57839 12238785 ~ 12239014 (-) True G11996
TU14772 lncRNA downstream 349531 11832428 ~ 11947322 (-) False AMCG00016203
TU14773 lncRNA downstream 388884 11890988 ~ 11907969 (-) False AMCG00016203
TU14679 lncRNA downstream 530276 11766152 ~ 11766577 (-) False AMCG00016194
TU14659 lncRNA downstream 558254 11738345 ~ 11738599 (-) True G11865
TU14864 lncRNA upstream 32504 12353160 ~ 12353381 (-) True G12041
TU14871 lncRNA upstream 34019 12354675 ~ 12355364 (-) True G12046
TU14892 lncRNA upstream 67142 12387798 ~ 12391408 (-) True G12058
TU14937 lncRNA upstream 317837 12638493 ~ 12638698 (-) True G12096
TU15107 lncRNA upstream 777335 13097991 ~ 13100224 (-) True G12235
AMCG00016210 mRNA downstream 793 12264274 ~ 12296060 (-) True AMCG00016210
AMCG00016208 mRNA downstream 60331 12208148 ~ 12236522 (-) True AMCG00016208
AMCG00016204 mRNA downstream 353201 11906076 ~ 11943652 (-) True AMCG00016204
AMCG00016203 mRNA downstream 392019 11890988 ~ 11904834 (-) True AMCG00016203
AMCG00016200 mRNA downstream 410660 11868787 ~ 11886193 (-) True AMCG00016200
AMCG00016211 mRNA upstream 4166 12324822 ~ 12328442 (-) False AMCG00016211
AMCG00016212 mRNA upstream 39919 12360575 ~ 12376528 (-) True AMCG00016212
AMCG00016217 mRNA upstream 152607 12473263 ~ 12499001 (-) True AMCG00016217
AMCG00016216 mRNA upstream 193702 12514358 ~ 12531045 (-) True AMCG00016216
AMCG00016219 mRNA upstream 282228 12602884 ~ 12607201 (-) True AMCG00016219
TU14520 other downstream 1449042 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 1449042 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 4102421 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 8376429 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8757660 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 2505 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 541443 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 541443 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 549184 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1233929 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_12825387_12869026.mRNA True 5999 mRNA 0.51 41 CI01000001 12824920 ~ 12869026 (-)